Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq44 174 2e-39 seq3860 138 2e-28 seq385 138 2e-28 seq276 131 3e-26 seq742 123 4e-24 seq438 123 4e-24 >seq44 Length=620527 Score = 174 bits (192), Expect = 2e-39 Identities = 198/266 (74%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||| | | | ||| || ||||| || |||||||| || ||||| |||||| Sbjct 255882 GCAAAGCGCCATAGGAAAGTTCTCCGCGATAATATTCAAGGAATAACTAAGCCTGCTATC 255941 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || |||||||| || || |||||| | ||||| | |||| || |||| Sbjct 255942 CGTCGTCTTGCGCGTCGTGGAGGTGTGAAGCGTATTTCTGGCCTCATCTACGAGGAGACC 256001 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | || ||||| | ||| |||||| | ||||||| || |||||||| Sbjct 256002 CGTGGTGTACTAAAAGTCTTCTTGGAGAACGTTATACGTGATGCTGTCACATATACCGAA 256061 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| ||||| ||||||| | || || || |||| ||||| || Sbjct 256062 CACGCCAAACGCAAGACCGTCACAGCCATGGACGTAGTTTACGCTCTGAAGCGTCAGGGT 256121 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 || | | | ||||| ||||| |||| Sbjct 256122 CGCACGCTCTATGGCTTTGGTGGTTA 256147 >seq3860 Length=1866 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || || || |||||||| ||||||||| Sbjct 1754 CTGCGTGACAACATCCAGGGCATTACGAAGCCGGCCATTCGACGTCTGGCACGTCGTGGT 1695 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| | |||| || |||| ||||| ||| | ||| | ||| Sbjct 1694 GGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 1635 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||||| || || || |||||||| || || ||||| ||| Sbjct 1634 CTGGAGAACGTCATTCGCGATGCCGTCACGTACACTGAGCACGCGAAGCGGAAGACCGTC 1575 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | || ||||| |||| ||||| || |||| | || || ||||| Sbjct 1574 ACTGCGATGGACGTGGTGTATGCGCTGAAGCGTCAGGGTCGTACCCTCTACGGCTTTGG 1516 >seq385 Length=66281 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || || || |||||||| ||||||||| Sbjct 26092 CTGCGTGACAACATCCAGGGCATTACGAAGCCGGCCATTCGACGTCTGGCACGTCGTGGT 26033 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| | |||| || |||| ||||| ||| | ||| | ||| Sbjct 26032 GGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 25973 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||||| || || || |||||||| || || ||||| ||| Sbjct 25972 CTGGAGAACGTCATTCGCGATGCCGTCACGTACACTGAGCACGCGAAGCGGAAGACCGTC 25913 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | || ||||| |||| ||||| || |||| | || || ||||| Sbjct 25912 ACTGCGATGGACGTGGTGTATGCGCTGAAGCGTCAGGGTCGTACCCTCTACGGCTTTGG 25854 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || || || |||||||| ||||||||| Sbjct 34494 CTGCGTGACAACATCCAGGGCATTACGAAGCCGGCCATTCGACGTCTGGCACGTCGTGGT 34435 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| | |||| || |||| ||||| ||| | ||| | ||| Sbjct 34434 GGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 34375 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||||| || || || |||||||| || || ||||| ||| Sbjct 34374 CTGGAGAACGTCATTCGCGATGCCGTCACGTACACTGAGCACGCGAAGCGGAAGACCGTC 34315 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | || ||||| |||| ||||| || |||| | || || ||||| Sbjct 34314 ACTGCGATGGACGTGGTGTATGCGCTGAAGCGTCAGGGTCGTACCCTCTACGGCTTTGG 34256 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || || || |||||||| ||||||||| Sbjct 52876 CTGCGTGACAACATCCAGGGCATTACGAAGCCGGCCATTCGACGTCTGGCACGTCGTGGT 52817 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| | |||| || |||| ||||| ||| | ||| | ||| Sbjct 52816 GGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 52757 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||||| || || || |||||||| || || ||||| ||| Sbjct 52756 CTGGAGAACGTCATTCGCGATGCCGTCACGTACACTGAGCACGCGAAGCGGAAGACCGTC 52697 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | || ||||| |||| ||||| || |||| | || || ||||| Sbjct 52696 ACTGCGATGGACGTGGTGTATGCGCTGAAGCGTCAGGGTCGTACCCTCTACGGCTTTGG 52638 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || || || |||||||| ||||||||| Sbjct 57759 CTGCGTGACAACATCCAGGGCATTACGAAGCCGGCCATTCGACGTCTGGCACGTCGTGGT 57700 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| | |||| || |||| ||||| ||| | ||| | ||| Sbjct 57699 GGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 57640 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||||| || || || |||||||| || || ||||| ||| Sbjct 57639 CTGGAGAACGTCATTCGCGATGCCGTCACGTACACTGAGCACGCGAAGCGGAAGACCGTC 57580 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | || ||||| |||| ||||| || |||| | || || ||||| Sbjct 57579 ACTGCGATGGACGTGGTGTATGCGCTGAAGCGTCAGGGTCGTACCCTCTACGGCTTTGG 57521 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || || ||||| || || || |||||||| ||||||||| Sbjct 66169 CTGCGTGACAACATCCAGGGCATTACGAAGCCGGCCATTCGACGTCTGGCACGTCGTGGT 66110 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| | |||| || |||| ||||| ||| | ||| | ||| Sbjct 66109 GGTGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 66050 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||||| || || || |||||||| || || ||||| ||| Sbjct 66049 CTGGAGAACGTCATTCGCGATGCCGTCACGTACACTGAGCACGCGAAGCGGAAGACCGTC 65990 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | || ||||| |||| ||||| || |||| | || || ||||| Sbjct 65989 ACTGCGATGGACGTGGTGTATGCGCTGAAGCGTCAGGGTCGTACCCTCTACGGCTTTGG 65931 >seq276 Length=91072 Score = 131 bits (144), Expect = 3e-26 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||| || || ||||| ||||| ||||| || || ||||| |||||||||||| Sbjct 90400 CGTGACAACATTCAGGGCATCACAAAGCCTGCTATTCGACGCCTGGCACGTCGTGGTGGA 90459 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || ||||||| | |||| || |||| || | ||| | ||| | ||||| Sbjct 90460 GTGAAACGCATCTCTGGGCTCATCTACGAGGAGACACGGGGTGTACTCAAGGTGTTCCTG 90519 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | || ||| || | || |||||||| || || |||||||||||| Sbjct 90520 GAGAACGTAATTCGCGACGCTGTCACGCACACTGAGCACGCGAAGCGCAAGACTGTCACC 90579 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | ||||| | || ||||| | || || || ||||||| | ||||| || || || Sbjct 90580 GCAATGGACGTGGTGTATGCTCTCAAGCGCCAGGGCCGTACTCTGTATGGCTTCGGCGGT 90639 Query 16697 TA 16698 || Sbjct 90640 TA 90641 >seq742 Length=31373 Score = 123 bits (136), Expect = 4e-24 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || || ||||| ||||| || || || || ||||| ||||||||||| Sbjct 2265 CGTGACAATATTCAGGGTATCACAAAGCCTGCCATTCGACGCCTGGCACGTCGTGGTGGC 2206 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || ||||||| | |||| || |||| || | ||| | ||| | || || Sbjct 2205 GTGAAACGCATCTCTGGGCTCATCTACGAGGAGACCCGGGGTGTGCTCAAGGTGTTTCTG 2146 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | ||||||| || || || |||||||| || || ||||| |||||| Sbjct 2145 GAGAACGTAATTCGTGATGCTGTCACGTACACTGAGCACGCGAAGCGCAAGACCGTCACC 2086 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| | || ||||| | || ||||| ||||||| | ||||| || || Sbjct 2085 GCAATGGACGTGGTGTATGCCCTCAAGCGTCAGGGCCGTACTCTGTATGGCTTCGG 2030 Score = 123 bits (136), Expect = 4e-24 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || || ||||| ||||| || || || || ||||| ||||||||||| Sbjct 4930 CGTGACAATATTCAGGGTATCACAAAGCCTGCCATTCGACGCCTGGCACGTCGTGGTGGC 4989 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || ||||||| | |||| || |||| || | ||| | ||| | || || Sbjct 4990 GTGAAACGCATCTCTGGGCTCATCTACGAGGAGACCCGGGGTGTGCTCAAGGTGTTTCTG 5049 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | ||||||| || || || |||||||| || || ||||| |||||| Sbjct 5050 GAGAACGTAATTCGTGATGCTGTCACGTACACTGAGCACGCGAAGCGCAAGACCGTCACC 5109 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| | || ||||| | || ||||| ||||||| | ||||| || || Sbjct 5110 GCAATGGACGTGGTGTATGCCCTCAAGCGTCAGGGCCGTACTCTGTATGGCTTCGG 5165 >seq438 Length=57727 Score = 123 bits (136), Expect = 4e-24 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || || ||||| ||||| || || || || ||||| ||||||||||| Sbjct 5914 CGTGACAATATTCAGGGTATCACAAAGCCTGCCATTCGACGCCTGGCACGTCGTGGTGGC 5855 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || ||||||| | |||| || |||| || | ||| | ||| | || || Sbjct 5854 GTGAAACGCATCTCTGGGCTCATCTACGAGGAGACCCGGGGTGTGCTCAAGGTGTTTCTG 5795 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | ||||||| || || || |||||||| || || ||||| |||||| Sbjct 5794 GAGAACGTAATTCGTGATGCTGTCACGTACACTGAGCACGCGAAGCGCAAGACCGTCACC 5735 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| | || ||||| | || ||||| ||||||| | ||||| || || Sbjct 5734 GCAATGGACGTGGTGTATGCCCTCAAGCGTCAGGGCCGTACTCTGTATGGCTTCGG 5679 Score = 123 bits (136), Expect = 4e-24 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || || ||||| ||||| || || || || ||||| ||||||||||| Sbjct 7669 CGTGACAATATTCAGGGTATCACAAAGCCTGCCATTCGACGCCTGGCACGTCGTGGTGGC 7728 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || ||||||| | |||| || |||| || | ||| | ||| | || || Sbjct 7729 GTGAAACGCATCTCTGGGCTCATCTACGAGGAGACCCGGGGTGTGCTCAAGGTGTTTCTG 7788 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | ||||||| || || || |||||||| || || ||||| |||||| Sbjct 7789 GAGAACGTAATTCGTGATGCTGTCACGTACACTGAGCACGCGAAGCGCAAGACCGTCACC 7848 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| | || ||||| | || ||||| ||||||| | ||||| || || Sbjct 7849 GCAATGGACGTGGTGTATGCCCTCAAGCGTCAGGGCCGTACTCTGTATGGCTTCGG 7904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068891281700