Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 2e-11 >seq5 Length=2931570 Score = 84.2 bits (92), Expect = 2e-11 Identities = 365/582 (63%), Gaps = 2/582 (0%) Strand=Plus/Plus Query 21453 ACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTA 21512 |||||| |||||||| || | ||||||||||| || | |||||||| | ||| | Sbjct 2232921 ACAATA--TGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGA 2232978 Query 21513 TTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTG 21572 | | || ||| ||| || | || ||||| | || | ||| || | ||| || || | Sbjct 2232979 TCAGCTCGTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGG 2233038 Query 21573 ACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCAC 21632 | ||||||| || |||||||| | |||||||| ||||| || || || | || || Sbjct 2233039 AAGCAAATGAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCG 2233098 Query 21633 CGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATAC 21692 |||| | | | ||||| ||||| | ||||| | ||||| | || || Sbjct 2233099 CGTACGGTGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACAC 2233158 Query 21693 AATCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNN 21752 | | || | ||| || || || ||| | ||| | ||| | | | Sbjct 2233159 ACGGCAACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTACCGGATCCTTGACGTAGG 2233218 Query 21753 NNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGT 21812 | |||||||||||||| || ||||||| || | || | ||| | Sbjct 2233219 TATCAATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCAT 2233278 Query 21813 AAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCAT 21872 ||||||| | ||||| | | ||| |||||| | |||| || | ||||||| Sbjct 2233279 AAAAACAACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCAT 2233338 Query 21873 TTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGT 21932 | || || ||||||||||| || || || ||||| | || || || | || ||| Sbjct 2233339 TAACGATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGC 2233398 Query 21933 TATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCC 21992 ||| | | ||| ||| || | ||| || | |||||| ||||| ||| ||||| Sbjct 2233399 CATCATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCC 2233458 Query 21993 AAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCAT 22034 | || |||| || || || || | ||| ||||||| Sbjct 2233459 AGAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCAT 2233500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531854923556000