Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5 282 5e-71 seq1 199 5e-46 >seq5 Length=2931570 Score = 282 bits (312), Expect = 5e-71 Identities = 521/754 (69%), Gaps = 19/754 (3%) Strand=Plus/Plus Query 33174 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 33233 ||||||||| || ||||| | || || || || | ||||||||||| |||||| Sbjct 2232812 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 2232871 Query 33234 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG-TGGATG-CAATAAATGT 33291 ||||| || | || || ||| |||| | | || | | || ||||| ||| Sbjct 2232872 GACCGCCTCCCTCATGATGTCATAAACCCTTTCCGCCGTAGGCTTGTTGACAATA--TGT 2232929 Query 33292 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351 ||||| || | ||||| ||||| ||| || || || |||| ||| || || ||||| Sbjct 2232930 TTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTA 2232989 Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 ||| ||||| || ||||| || |||||||| || ||||| || |||||||| ||||| Sbjct 2232990 CTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAA 2233049 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 ||||||||||| | || || | ||||| || || | || | ||| | || ||| | Sbjct 2233050 CCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTA--CGGTG 2233107 Query 33472 C--TGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33526 | | | || | |||||| | ||||||||||||||||||| ||||| |||| || Sbjct 2233108 CCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACG 2233167 Query 33527 TTTCTATGGCATTAAAGAGATAGtttttttCATTAC--TATCTTTAACATAAGTATCGAT 33584 ||| ||||| ||||| ||| ||| ||| ||| ||| || || || ||||| || Sbjct 2233168 TTTGAATGGCGTTAAACAGAAAGTCGCGTTC--TACCGGATCCTTGACGTAGGTATCAAT 2233225 Query 33585 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33644 || |||| |||||||| |||||||||||||| | ||| | || | ||| || ||||| Sbjct 2233226 CAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACA 2233285 Query 33645 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACT 33702 | |||||||| ||| || || || ||||||| ||| | | ||||||||| || Sbjct 2233286 ACGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACG 2233343 Query 33703 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33762 || || |||||||| || || || ||||| |||| || || | ||| | Sbjct 2233344 ATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCA 2233403 Query 33763 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822 | || | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| || Sbjct 2233404 TTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAA 2233463 Query 33823 GATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACA 33882 || || | || || || || | | ||| || |||| |||||||| || | | ||| Sbjct 2233464 GAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACG 2233523 Query 33883 AATCTATTTGGATTTGGTGCAAGGATGGGTTCCA 33916 ||||| ||||| || |||| || ||||||| Sbjct 2233524 AATCTTCGGGGATTAGGAACAAGTATAGGTTCCA 2233557 >seq1 Length=4220646 Score = 199 bits (220), Expect = 5e-46 Identities = 418/616 (68%), Gaps = 8/616 (1%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACG 63195 ||||||||| || |||||| || | ||| || || || |||| || ||| || | Sbjct 1713980 TTCGAACTCCTCCCCCCAA-CAGTCAGCAAGACCGGGGCACTCATGGGGGTCCATAAAGG 1713922 Query 63196 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 63255 |||| | | ||| ||||| ||||| || ||||| ||||||||||| || | | Sbjct 1713921 TCCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGA 1713862 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 | ||||| | | | | || || || || ||||| | || | ||| || Sbjct 1713861 AGAGATCCCGAGCGCGAATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCA 1713802 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 | ||| | |||||| ||||| | || ||||| | | || || ||||| || |||| Sbjct 1713801 GTACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTATTGCCTC 1713742 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 ||||||| | || | ||||||| | || | || | | ||| || | || ||| || | Sbjct 1713741 CCTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGG 1713682 Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA-CGAAT--ATTACTAATTGATA 63492 | ||||| || || | |||| | | | || || || || | | ||||| Sbjct 1713681 ACTCCCCATTAGTTCCAGCGATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA-- 1713625 Query 63493 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATAC 63552 |||| || || || || |||| ||||| | ||| ||| |||| | ||||||||| |||| Sbjct 1713624 GACCGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATAC 1713565 Query 63553 CCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 63612 |||| || || || || |||| |||| | ||||||||||||||| || | | | Sbjct 1713564 CCTCGATACTGTCGTCCTTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCG 1713505 Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63672 | || |||||||| | || || || ||||| | ||||| |||||||| | |||||||| Sbjct 1713504 TCCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGT 1713445 Query 63673 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63732 | ||||||||||| | ||| | ||| |||||| |||| || ||| ||||| |||| Sbjct 1713444 AGGTCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACA 1713385 Query 63733 TGTGCTGAGGTCTTTC 63748 ||| |||||| || || Sbjct 1713384 TGTACTGAGGCCTCTC 1713369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622893470804000