Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 150 5e-31 seq5 91.5 4e-13 >seq1 Length=4220646 Score = 150 bits (166), Expect = 5e-31 Identities = 491/741 (66%), Gaps = 34/741 (5%) Strand=Plus/Plus Query 363393 CGGATATAAGACGATGGAGAAATCCTACCTATCTC-GTATCAATGGTGATATTGTTGAAC 363451 || || | ||||| | ||||| || || || |||| ||| |||| | ||| || Sbjct 1713314 CGTATTTTAGACGTTAGAGAAGTCGTATCT-TCTCCGTAGGGATGGGAAAATTTGGGAGA 1713372 Query 363452 GCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCG 363511 | || ||| | ||||| ||||| || | || ||||| ||| | ||||| || || | Sbjct 1713373 GGCCTCAGTACATGTTTATGCGCGTCTCAATAGGTATTCATGGTGAAGATGTGGACGCTG 1713432 Query 363512 CGATTGAAACATATAAGCT----TCT---AAGTGCTCGTGTATTCACGCACGCCACGCCA 363564 | ||||| || || || || ||| ||||| | | |||||||| | | || Sbjct 1713433 CTATTGAGACCTACAATCTAATGTCTGAAAAGTGGTTG---ATTCACGC----CTCACCC 1713485 Query 363565 ACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATG 363624 || | | |||||||| || | | | || ||||||||| || ||| | || | |||| Sbjct 1713486 ACTCTTTTTAATGCTGGGACGCCTTACCCTCAGATGTCTAGCTGTTTTTTGCTTACAATG 1713545 Query 363625 AAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAG 363684 |||||||| ||||||||||| | |||||| || || | ||||| || || || || Sbjct 1713546 AAGGACGACAGTATCGAGGGTATATATGACACGCTCAAACAATGTGCACTGATCTCGAAA 1713605 Query 363685 AATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCG-TGCACAGAACAGTTACATT 363741 || || || || || | || || || || || | || ||| |||| | | | | Sbjct 1713606 AACGCGGGTGGGATCG--GTCTCAATGTTCACTGCATCCGAAGCA-AGAATACGTTTA-T 1713661 Query 363742 CGC-GGCAC--AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT 363798 ||| || || | |||| | || ||||| || || || |||||||| || || ||| Sbjct 1713662 CGCTGGAACTAATGGGG--AGTCCAATGGTCTTGTACCGATGCTTCGGGTCTTCAACAGC 1713719 Query 363799 ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTC 363858 || || | || ||||| ||||| || || || || || ||||| || |||||| Sbjct 1713720 ACCGCTCGTTATGTCGATCAGGGAGGCAATAAACGACCCGGTGCCTTTGCCATCTATCTC 1713779 Query 363859 GAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAG 363918 || || ||| | ||| | | ||||| | ||| | ||||| ||||| || || Sbjct 1713780 GAACCATGGCATCCGGATGTACTGCAGTTTGTGGAGTTACGGAAGAACACTGGCGCTGAA 1713839 Query 363919 GAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGC 363978 || | || || || ||||| ||| ||||||||| || | || | || |||||||| Sbjct 1713840 GAGATTCGCGCTCGGGATCTCTTCCTCGCACTTTGGATTCCCGATCTATTCATGAAGCGA 1713899 Query 363979 GTGGAGGCAGGTAAGAATTGGTCACTCTTTTG-CCCACACGAATGTCCAGGTCTTTCCGA 364037 || |||||||||| ||| | || | | | ||| || || || || |||||| | || Sbjct 1713900 GTTGAGGCAGGTAGTTCGTGGAC-CTTTATGGACCCCCATGAGTGCCCCGGTCTTGCTGA 1713958 Query 364038 -TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG-AGGGAAAGGCT 364095 ||| ||||| || || | | || |||| ||||| || |||| ||| | |||| Sbjct 1713959 CTGT-TGGGGGGAGGAGTTCGAAATGCTTTACGCGAAGTACGAGTCGGAAGGTAGAGGC- 1714016 Query 364096 CGTAAGACAATTCCCGCACAG 364116 || ||||| | || || ||| Sbjct 1714017 CGCAAGACGCTGCCTGCTCAG 1714037 Score = 87.8 bits (96), Expect = 5e-12 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 ||||| || ||||| | || | |||| |||| |||||||| ||||| |||||||||||| Sbjct 1714135 CAGATCGAAACAGGCAATCCGTTTATGCTGTATAAAGATTCCTGCAATCGCAAGTCCAAC 1714194 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 || || ||||| || || || || ||||| || || |||||| | || |||| Sbjct 1714195 CATCAACACCTAGGAACCATAAAGTGCTCGAACCTTTGCACTGAGATTGTCGAGTACA-- 1714252 Query 364264 GCTC-CCGAC-GAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 |||| || || |||||||| || || || | || || || | ||||| Sbjct 1714253 GCTCGCCTACAGAGACTGCTGTCTGCAATTTGGCTTCCATTTCTCTTCC 1714301 >seq5 Length=2931570 Score = 91.5 bits (100), Expect = 4e-13 Identities = 146/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA---TTCGCGGAACGT 22494 || ||||| |||||||| || | ||||| ||| || || | |||||| ||| Sbjct 2233150 AAGAAGGCCGATTGGGCTCTTAGGTGGATTGCAAATAAAAAGGCACCGTACGCGGAGCGT 2233091 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 || | || || |||| |||| ||| | ||||||||||| ||||| | | ||||| Sbjct 2233090 CTGGTGGCGTTCGCTGCTATTGAGGGCGTATTCTTTTCTGGTTCATTTGCTTCCATCTTC 2233031 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||||| || || |||| | ||||| || || || ||| || ||| | || || ||| Sbjct 2233030 TGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACCTTTAGTAACGAGCTGATCAGTCGA 2232971 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTG 22643 ||||| || || || || |||||||| || Sbjct 2232970 GATGAAGGCCTCCACACGGATTTTGCATG 2232942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303238375395800