Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq52 105 5e-18 seq15 98.7 8e-16 seq4 96.9 3e-15 >seq52 Length=575441 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| ||||| ||||| | || ||| | || ||||| || Sbjct 526333 TGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGC 526274 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || |||||| | || || || || |||||| || | |||||| ||||| ||| | | Sbjct 526273 TTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTC 526214 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||||| ||| ||| |||| || || || || |||||| Sbjct 526213 GCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTC 526154 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| |||||||| ||||| Sbjct 526153 AGAGTTTTCACAAAAATTTGCAT 526131 Score = 96.9 bits (106), Expect = 3e-15 Identities = 184/267 (69%), Gaps = 12/267 (4%) Strand=Plus/Minus Query 16672 TTTATTTTAAAATGTATTATTGTTTAGCCGCATTTACCCTCCTCGTAGCCTCAGTACCAT 16731 ||||||||||| || ||||| | ||| | | ||||| || || | || || | Sbjct 537740 TTTATTTTAAA---TAA-ATTGTGT----GCAATCAGCCTCCACGAAGACGAAGCACAAG 537689 Query 16732 ATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTG 16791 || || |||||||||||||| ||||||||||| | | ||| | | || ||||| || Sbjct 537688 GTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAACTG 537629 Query 16792 TTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATT 16849 ||||| || | || | || || ||||| || | |||||| ||||| || || Sbjct 537628 CTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTT 537569 Query 16850 TGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCG 16909 ||| |||||| | | | | ||| | ||||||| |||| ||||| ||||| ||| Sbjct 537568 TGC--CTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCG 537511 Query 16910 GTCAGCGTTTTGACAAAAATCTGCATT 16936 || || || || || || ||||||||| Sbjct 537510 GTTAGAGTCTTCACGAAGATCTGCATT 537484 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || ||||| ||||||||||| ||||||||||||| | || |||||||||| ||| Sbjct 519451 TGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCCAACTGT 519510 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || | ||||| || ||| || | ||||||||||| ||| | Sbjct 519511 TTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTG 519570 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | || | ||||| || | |||||| || || ||||| Sbjct 519571 GCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTA 519630 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 ||||| || ||||| || ||||| Sbjct 519631 AGCGTCTTCACAAAGATTTGCAT 519653 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| || ||||| ||||| || || ||||||||||| | | || | || Sbjct 527027 CAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGATAGAGTACGACCATC 526968 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||||| || || || || | || | || || ||||| || | |||||| ||||| Sbjct 526967 CTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTC 526908 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 || | | |||||| | | | || ||| | ||||||| |||| ||||||||| Sbjct 526907 CTGGATCTTCGCCTTCACGTTCTCTATAGAGTCACTGGGCTCCACCTCCAAGGTGATGGT 526848 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || ||||| ||||| |||||||| Sbjct 526847 CTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 526815 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| ||||| ||||||||||| ||||||||||||| | || | | ||| Sbjct 526570 AGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCC 526511 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||| || || ||| | || | ||||| ||||| || | ||| || || || Sbjct 526510 TCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCT 526451 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | ||| || | | | | |||| ||| || ||| | || ||||| Sbjct 526450 TGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTC 526391 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || ||||||||||||||||| Sbjct 526390 TTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 526359 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || ||||| ||||||||||| ||||||||||||| | || | |||||||| ||| Sbjct 527701 TGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCCTCCAACTGT 527642 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || | ||||| || ||| || | ||||||||||| ||| | Sbjct 527641 TTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTG 527582 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | || | ||||| || | |||||| || || ||||| Sbjct 527581 GCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTA 527522 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || || |||||||| Sbjct 527521 AGCGTCTTTACGAAGATCTGCAT 527499 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||| |||||||| ||||||||||| | || ||| | || Sbjct 537240 AGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCT 537181 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| || || |||||| | || || || || || || || | |||||| ||||| Sbjct 537180 TCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTTGTCC 537121 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| |||||| | | | | ||| | ||||||| |||| ||||| | Sbjct 537120 TGAATCTTTGC--CTTCACATTCTCTATTGAGTCACTGGGCTCCACCTCCAGTGTGATTG 537063 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || |||| || || || || || ||||| Sbjct 537062 TTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 537029 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| || ||||| |||||||| || ||||||||||||| || || | || Sbjct 527255 CAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGACCATC 527196 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||||| || || || ||| | || | || || |||||| || | |||||| || || Sbjct 527195 CTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTATC 527136 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 || | | |||||| | | | | ||| | |||||| |||| || || || Sbjct 527135 CTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGT 527076 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| || ||||| || ||||| Sbjct 527075 CTTCCCAGTCAGCGTCTTCACAAATATTTGCAT 527043 >seq15 Length=1207391 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||||||| || || || | ||| || || ||||||||||| || || ||||||| Sbjct 831620 CCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAG 831679 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || |||||||||| || || || || | |||||||| ||||| || || Sbjct 831680 AGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGT 831739 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || |||||| || || | | | | || | ||||| Sbjct 831740 ATTCCCTCTTTGTCTTGGATTTTTGCT--TTTACGTTCTCAATGGAATCACTTGGCTCAA 831797 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||| ||||||||||| || || || || |||||||| |||||| Sbjct 831798 CCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 831847 >seq4 Length=3027866 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || || ||||| || | | || | ||||||||||| Sbjct 343663 TGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGC 343722 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| ||||||| ||||||||||| || | ||||| ||||| ||| | Sbjct 343723 TTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTA 343782 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | || ||| |||||| || | ||||| ||||| ||||| Sbjct 343783 GCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTA 343842 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| |||||||||||||| Sbjct 343843 AGAGTTTTCACAAAAATCTGCAT 343865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405053934631000