Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq283 131 1e-25 seq52 118 7e-22 seq17 102 5e-17 seq4 98.7 7e-16 >seq283 Length=89750 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 54147 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 54206 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||||||||||||||| || Sbjct 54207 TAATCCATTCATGCGCGTCACTAATTAGATGAAGA 54241 Score = 102 bits (112), Expect = 5e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| || Sbjct 57380 TTACTCTCTCTTCAGAGTACTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACT 57439 Query 20004 CGCGGTAATATTTAGCCTT 20022 || | ||||||||||| Sbjct 57440 CGTGCCCGTATTTAGCCTT 57458 >seq52 Length=575441 Score = 118 bits (130), Expect = 7e-22 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | ||| | |||||||||| |||||||| || ||||| | Sbjct 537259 CATT-CCACCACGAAGACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGT 537201 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||||||| || | || || || || ||||| ||||| || |||||||| ||||| | Sbjct 537200 CAGACAAGGTGCGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTG 537141 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||| || |||||| ||| ||| ||||||||||| | | || | | Sbjct 537140 GTGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCTATTGAGTCACTGGGCT 537081 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || | ||| || ||||| || ||||| || |||||||| || ||||| Sbjct 537080 CCACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 537029 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | |||||||| |||||| ||||| || ||| || ||||| ||||| ||||| Sbjct 527041 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGAT 526982 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| | || || || || ||||| || || || | ||||| || || | || Sbjct 526981 AGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 526922 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || |||||| |||| | || || | || || Sbjct 526921 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATAGAGTCACTGGGCTCCACC 526862 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || || | |||||| || ||||||||||| Sbjct 526861 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 526815 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | || | |||||| ||||| || ||| || ||||| ||||| || | Sbjct 519197 TACCACCACGGAGTCGAAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGG 519256 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || ||||| || ||||| ||||| || | ||||| || || | | Sbjct 519257 ACAACGTGCGACCATCTTCTAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTG 519316 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGA--CAGTATCTCCACTTTC 38266 ||| ||| || |||||| || || ||||||||||| | ||| ||| | || Sbjct 519317 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCTATCGAGTCACTCGGC--TC 519374 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || ||||| || || || |||| || ||||| ||||| |||||| Sbjct 519375 CACCTCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCATG 519426 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | ||| | ||||| || |||||||||||| ||||| || || Sbjct 519427 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 519486 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || |||| || || ||||| || ||||| || | || || ||||| | ||| Sbjct 519487 AGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 519546 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || |||||||| ||| || ||||||||||| | | ||| | | ||||| Sbjct 519547 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 519606 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACAAGCTC 38330 || | || ||||| || || || | || ||||| || || |||||| | || |||| Sbjct 519607 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCATGATGAGCACGCTC 519666 Query 38331 G 38331 | Sbjct 519667 G 519667 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | ||| | ||||| || ||||| ||||| ||||| || | Sbjct 527499 TACCACCACGCAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTG 527440 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || || || || || || || || | || || ||||| | | Sbjct 527439 ATAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGCG 527380 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || || ||| |||||| ||||||||||| | || || | | ||| | Sbjct 527379 GAATACCCTCCTTATCCTGAATTTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCA 527320 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| | |||||||| || || |||| || ||||||||||| |||||| Sbjct 527319 CTTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTCACGAATATTTGCATG 527270 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | ||| | ||||| || |||||||||||| ||||| || || Sbjct 527725 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 527666 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || || ||||| || ||||| || | || || ||||| | ||| Sbjct 527665 AGAGTGCGACCATCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 527606 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || |||||||| ||| || ||||||||||| | | ||| | | ||||| Sbjct 527605 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 527546 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || ||||| || || || | || || ||||| |||||||| Sbjct 527545 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTTACGAAGATCTGCAT 527499 >seq17 Length=1101097 Score = 102 bits (112), Expect = 5e-17 Identities = 80/96 (83%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT------AGGGGGTAATCTCG 25955 ||||||||||||||||||||| ||| |||||||||||||| || | | ||||||| Sbjct 1093182 AAGCCCGTTCCCTTGGCTGTGATTTTGCTAGATAGTAGATATGGACAGTGAGAAATCTCG 1093123 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| | |||||| || ||||||||||||||| || Sbjct 1093122 TTAATTCATTCATGTGCATCACTAATTAGATGATGA 1093087 >seq4 Length=3027866 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| || |||||| ||||||||||||||||| || |||| | || || ||||| Sbjct 343663 TGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGC 343722 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || || || ||||| || | || | || || ||||| ||| || Sbjct 343723 TTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTA 343782 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||||| | || ||| || || || | || |||||||| || || Sbjct 343783 GCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTA 343842 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 | |||||||| || ||||||||| Sbjct 343843 AGAGTTTTCACAAAAATCTGCATG 343866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334919033033900