Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5 266 4e-66 seq1 214 2e-50 >seq5 Length=2931570 Score = 266 bits (294), Expect = 4e-66 Identities = 519/756 (69%), Gaps = 23/756 (3%) Strand=Plus/Plus Query 32531 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 32590 ||||||||| || ||||| | || || || || | ||||||||||| ||||||| Sbjct 2232812 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 2232871 Query 32591 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGG--TGGATACAATAAAT 32646 |||||| || | || || || || | |||| | | || || |||||| | Sbjct 2232872 GACCGCCTCCCTCATGATG--TCATAAACCCTTTCCGCCGTAGGCTTGTTGACAATA--T 2232927 Query 32647 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 32706 ||||||| || | ||||| ||||| ||| || || || |||| ||| || | |||| Sbjct 2232928 GTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGT 2232987 Query 32707 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 32766 | ||| ||||| || ||||| || |||||||| || ||||| || ||||| ||||||| Sbjct 2232988 TACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATG 2233047 Query 32767 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG 32826 | ||||||||||| | || || | || || || || | || | ||| | || ||| Sbjct 2233048 AACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTA--CGG 2233105 Query 32827 CGC--TGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881 || | | || | |||||| | ||||||||||||||||||| ||||| |||| Sbjct 2233106 TGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAA 2233165 Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCA 32939 || | || || ||||| ||| ||| ||| ||| ||| || || || |||||| Sbjct 2233166 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTC--TACCGGATCCTTGACGTAGGTATCA 2233223 Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999 |||| |||| |||||||| |||||||||||||| | ||| | ||| | ||| || || Sbjct 2233224 ATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAA 2233283 Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCA 33057 || | |||||||| ||| || || || ||||||| ||| | || ||||||||| | Sbjct 2233284 CAACGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAA 2233341 Query 33058 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 33117 | || || |||||||| || || || ||||| |||| || || | ||| | Sbjct 2233342 CGATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCAT 2233401 Query 33118 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 33177 | || | | ||| ||| ||| ||| || | || ||| ||||| || |||||||| | Sbjct 2233402 CATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGA 2233461 Query 33178 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 33237 | || || | || || || || | | ||| || ||||| ||||| || || | | || Sbjct 2233462 AAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAA 2233521 Query 33238 CAAATCTATTTGGATTTTTTGCAAGGATTGGTTCCA 33273 | ||||| ||||| |||| || ||||||| Sbjct 2233522 CGAATCTTCGGGGATTAGGAACAAGTATAGGTTCCA 2233557 >seq1 Length=4220646 Score = 214 bits (236), Expect = 2e-50 Identities = 419/615 (68%), Gaps = 6/615 (1%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||||||||| || |||||| | | || || || || |||| || ||| || | Sbjct 1713980 TTCGAACTCCTCCCCCCAACAGTCAGCAAGACCGGGGCACTCATGGGGGTCCATAAAGGT 1713921 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 |||| | | ||| ||||| ||||| || ||||| ||||||||||| || | || Sbjct 1713920 CCACGAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAA 1713861 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 ||||| | | | | || || || || ||||| | || | ||| || Sbjct 1713860 GAGATCCCGAGCGCGAATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAG 1713801 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 | ||| | |||||| ||||| | || ||||| | | || || ||||| || ||||| Sbjct 1713800 TACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTATTGCCTCC 1713741 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 |||||| | || | ||||||| | || | || | | ||| || | || ||||||||| Sbjct 1713740 CTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGA 1713681 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCA-CGAAT--ATTACTAATTGATAG 63348 ||||| || || | |||| | | | || || || || | | ||||| | Sbjct 1713680 CTCCCCATTAGTTCCAGCGATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--G 1713624 Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 ||| || || || || |||| ||||| | ||| ||| |||| | ||| ||||| || || Sbjct 1713623 ACCGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACC 1713564 Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468 ||| ||||| || ||| |||| |||| | ||||||||||||||| || | | || Sbjct 1713563 CTCGATACTGTCGTCCTTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGT 1713504 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528 || |||||||| | || || || |||||| | ||||| |||||||| | ||||||||| Sbjct 1713503 CCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTA 1713444 Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 ||||||||||| | ||| | ||| |||||| |||| || ||| ||||| ||||| Sbjct 1713443 GGTCTCAATAGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACAT 1713384 Query 63589 GTGCTGAGGTCTTTC 63603 || |||||| || || Sbjct 1713383 GTACTGAGGCCTCTC 1713369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633577349240000