Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq52 125 6e-24 seq4 116 3e-21 seq15 114 1e-20 >seq52 Length=575441 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || ||| | |||||| | || |||||| | | Sbjct 537029 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAAACAATCACACTGGAGGTGGAGCCCAGT 537088 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| | || ||| |||| ||||| | ||| ||||| || || |||||||| || || Sbjct 537089 GACTCAATAGAGAATGTGAAGGCAAAGATTCA-GGACAAGGAGGGCATTCCACCAGATCA 537147 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || ||||| || || || || ||||||| |||||| || || ||||| Sbjct 537148 GCAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAA 537207 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| |||||||| || ||| | ||||| Sbjct 537208 CATCCAAAAGGAATCCACTCTTCATCTTGTGCT 537240 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| |||| || || | || || | || |||||| || | Sbjct 519425 ATGCAAATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 519366 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| ||||| || ||| ||||| || || || ||||| ||||| Sbjct 519365 GACTCGATAGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 519306 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || || || |||||||||| |||||| || ||| ||||| Sbjct 519305 CAACGATTGATCTTTGCAGGAAAGCAGTTAGAAGATGGTCGCACGTTGTCCGACTACAAC 519246 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || ||||| || || ||||| Sbjct 519245 ATTCAGAAAGAGTCGACGCTTCACTTGGTGCT 519214 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| |||| || || | || || | || |||||| || | Sbjct 527727 ATGCAAATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 527786 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| ||||| || ||| || || || || || ||||| ||||| Sbjct 527787 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGACCAG 527846 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || || || |||||||||| |||||| || ||| ||||| Sbjct 527847 CAACGATTGATCTTTGCAGGAAAGCAGTTAGAAGATGGTCGCACGTTGTCCGACTACAAC 527906 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || ||||| || || ||||| Sbjct 527907 ATTCAGAAAGAGTCGACGCTTCACTTGGTGCT 527938 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| |||| || || | || || | || |||||| || | Sbjct 527043 ATGCAAATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 527102 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| ||||| || ||| || || || || || ||||| ||||| Sbjct 527103 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGACCAG 527162 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || || || || || |||| |||||| || ||| ||||| Sbjct 527163 CAACGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAAC 527222 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || ||||| || || ||||| Sbjct 527223 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCT 527254 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| |||| || || | || || | |||||||| | Sbjct 527271 ATGCAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAGC 527330 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| |||| || |||| ||| || || || || ||||| ||||| || Sbjct 527331 GACACAATTGAGAATGTGAAGGCCAAAATTCA-GGATAAGGAGGGTATTCCGCCTGATCA 527389 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || ||||| || || || |||| ||| || | || ||||| Sbjct 527390 GCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCAGACTACAA 527449 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || ||||| || || || | ||||| Sbjct 527450 CATTCAGAAGGAATCGACCCTTCACCTTGTGCT 527482 >seq4 Length=3027866 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | ||||| ||| | ||||| | || || ||| | || Sbjct 343865 ATGCAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAGCCCTCC 343806 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||| ||| ||||| | || | ||| ||||| || ||||||||||| ||||| Sbjct 343805 GATTCTATTGAGAATGTGAAGGCTAAGATTCAA-GACAAGGAGGGGATTCCACCAGACCA 343747 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| |||||||||| ||||| ||||| || |||| || | | |||||||| Sbjct 343746 ACAGCGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAA 343687 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || || || || || | ||||| Sbjct 343686 TATTCAGAAGGAGTCAACCCTTCACCTTGTGCT 343654 >seq15 Length=1207391 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| ||||| |||||| | || || ||| |||| || | || || ||| | Sbjct 831850 AATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCC 831791 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| | || ||| | || ||||||| |||||||| || || ||||| || Sbjct 831790 AAGTGATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGA 831731 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| ||| |||| || ||||| || || || || || | || ||| | ||| || Sbjct 831730 TCAACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGACTA 831671 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| || || || || ||| | || ||||| ||| ||||||| Sbjct 831670 TAATATTCAAAAGGAGTCGACACTCCATCTTGTTCTAAGACTACGAGGAGG 831620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433291559823500