Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5 194 2e-44 >seq5 Length=2931570 Score = 194 bits (214), Expect = 2e-44 Identities = 486/730 (67%), Gaps = 14/730 (2%) Strand=Plus/Plus Query 92941 TATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGT 93000 ||| |||||| |||| || ||||||||| || | |||| ||||| || ||||| || Sbjct 2232791 TATATACTGACACATTAAGCGACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGT 2232850 Query 93001 CAAGAAAT---CTTTCTCGATTACA-ACGGCTTCTTTCAAGATTTCTATTACTCTACTAT 93056 ||||||| | ||| | ||| || || || ||| ||| || || | | || | Sbjct 2232851 -AAGAAATTCGCATTC---AATACTGACCGCCTCCCTCATGATGTC-ATAAACC--CTTT 2232903 Query 93057 TTG--GT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAAC 93113 | || || || | || | || || | || | ||| ||||| || || || | | Sbjct 2232904 CCGCCGTAGGCTTGTTGACAATATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGC 2232963 Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 |||| ||||| |||| ||| || || || || | || || | || || || |||| Sbjct 2232964 CTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCT 2233023 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 ||||||| || || |||||||| ||||||||| |||| || || | || || || | Sbjct 2233024 TGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACG 2233083 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 |||| | ||| || || | ||| ||| | ||||| | | ||||||||||| Sbjct 2233084 CCACCAGACGCTCCGCGTACGGTGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGG 2233143 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCG 93353 | || || || ||| || | |||| || |||||||| || | || || || ||| Sbjct 2233144 CCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTACCG 2233203 Query 93354 AATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTG 93413 ||| | ||| ||||| || | ||||| |||||||||||||| | || || | | Sbjct 2233204 GATCCTTGACGTAGGTATCAATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGG 2233263 Query 93414 CAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCT 93473 | | ||| | ||| || ||||| | ||| || | || || || || | | |||| || Sbjct 2233264 CGACTTGCATTCCATAAAAACAACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCA 2233323 Query 93474 CTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTA 93533 ||||||||||| || || ||||| || || || |||||||| | || | | Sbjct 2233324 AAGTTAGATTTTCATTAACGATGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAA 2233383 Query 93534 TAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGA 93593 | || || ||| |||| ||||| | ||||| || | ||||| || | | ||| | Sbjct 2233384 TGAAGTGACGCTCGCCATCATTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAA 2233443 Query 93594 CTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGAT 93653 |||| || || ||||| || || || | ||||| ||||| | ||||| || || || | Sbjct 2233444 CTTCCTCAACTGTCCAGAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGT 2233503 Query 93654 ATTGAATTGG 93663 |||| || || Sbjct 2233504 ATTGGATGGG 2233513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556812770756000