Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq52 98.7 8e-16 seq15 95.1 1e-14 >seq52 Length=575441 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| |||||||||| || ||||| |||| |||||||||| Sbjct 526131 ATGCAAATTTTTGTGAAAACTCTGACCGGCAAGACAATTACGCTGGAGGTGGAACCCAGC 526190 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || || ||| ||||| || ||| |||| || || Sbjct 526191 GACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAG 526250 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || || | |||||| || || ||||||||| | || || | || ||||| Sbjct 526251 CAACGTCTAATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTATAAC 526310 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || || | ||| | || || || ||||| Sbjct 526311 ATTCAAAAGGAGTCAACCCTCCACCTTGTGCTCCGACTTCGTGGTGG 526357 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||||||||| || | |||||||| ||||| || | ||| ||||||||| Sbjct 526359 ATGCAGATTTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAGC 526418 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||||| ||| | ||||| || || || || |||||| |||| || || Sbjct 526419 GATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAAGGCATTCCACCAGACCAG 526478 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | | || | ||| || || |||||||| ||| ||| | |||| || || Sbjct 526479 CAGCGTTTGATCTTTGCTGGTAAGCAATTGGAGGATGGCCGCACTCTTTCCGACTACAAC 526538 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || ||||| || || || || ||| | ||| | || || || ||||||| Sbjct 526539 ATTCAAAAGGAGTCAACGCTTCATCTTGTGCTACGACTTCGTGGTGGCA 526587 >seq15 Length=1207391 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 || ||||||||||||||| || || | || || |||||||| ||| | || || || Sbjct 831850 AATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCC 831791 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 || ||||| ||| | |||||| |||||| |||||||| || | || || Sbjct 831790 AAGTGATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGA 831731 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 ||||||| ||||||| | || || || || ||||| || ||| | |||| || Sbjct 831730 TCAACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGACTA 831671 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAATAAATA 111422 |||||| ||||| || || ||||| ||| | || | | || || || |||| ||||| Sbjct 831670 TAATATTCAAAAGGAGTCGACACTCCATCTTGTTCTAAGACTACGAGGAGGCATGAAATA 831611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423004424980000