Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4 145 6e-30 seq52 143 2e-29 seq15 134 1e-26 >seq4 Length=3027866 Score = 145 bits (160), Expect = 6e-30 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| |||||| | ||||| ||||| |||||||||| || || || || Sbjct 343865 ATGCAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAGCCCTCC 343806 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | || || ||||||||||||||||| |||||||| || ||| Sbjct 343805 GATTCTATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAGGGGATTCCACCAGACCAA 343746 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| ||||| || || |||||| || || | || |||||||| Sbjct 343745 CAGCGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAAT 343686 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 343685 ATTCAGAAGGAGTCAACC 343668 >seq52 Length=575441 Score = 143 bits (158), Expect = 2e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||||||||| |||||| | ||||| || || | || || || |||||| ||| Sbjct 526130 GATGCAAATTTTTGTGAAAACTCTGACCGGCAAGACAATTACGCTGGAGGTGGAACCCAG 526189 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | || || | || || ||||||||||||||||| |||||||| || || Sbjct 526190 CGACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCA 526249 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||||||| || ||||| || || ||||| || ||| |||||| | || || || || Sbjct 526250 GCAACGTCTAATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTATAA 526309 Query 22398 CATTCAAAAAGAATCCACC 22416 ||||||||| || || ||| Sbjct 526310 CATTCAAAAGGAGTCAACC 526328 Score = 132 bits (146), Expect = 4e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || || || ||||| || || ||||| |||| || || ||||| ||| Sbjct 537028 GATGCAAATCTTCGTGAAGACTTTGACTGGCAAAACAATCACACTGGAGGTGGAGCCCAG 537087 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || | | || || | || ||| ||||| ||||||||||| |||||||| ||||| Sbjct 537088 TGACTCAATAGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCA 537147 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||||| || || ||||| || || ||||| || ||| |||||| | || || ||||| Sbjct 537148 GCAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAA 537207 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| ||||| |||||||| Sbjct 537208 CATCCAAAAGGAATCCAC 537225 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| |||||||| || ||| ||||||| || || | || || ||||| ||| ||| Sbjct 526358 GATGCAGATTTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAG 526417 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||| | | || | | || || || ||||| ||||| || |||||||| || || Sbjct 526418 CGATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAAGGCATTCCACCAGACCA 526477 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || ||| | || ||||| || || || || |||||| |||||| | ||||| ||||| Sbjct 526478 GCAGCGTTTGATCTTTGCTGGTAAGCAATTGGAGGATGGCCGCACTCTTTCCGACTACAA 526537 Query 22398 CATTCAAAAAGAATCCAC 22415 ||||||||| || || || Sbjct 526538 CATTCAAAAGGAGTCAAC 526555 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || | || || ||||||||| | | | Sbjct 527271 ATGCAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAGC 527330 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || |||||||| || |||||||||||||| || ||||| Sbjct 527331 GACACAATTGAGAATGTGAAGGCCAAAATTCAGGATAAGGAGGGTATTCCGCCTGATCAG 527390 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || ||||| ||||| |||||| || ||| | || || |||||| Sbjct 527391 CAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCAGACTACAAC 527450 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || ||||| ||| Sbjct 527451 ATTCAGAAGGAATCGACC 527468 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| || || |||| || || || || | | Sbjct 519653 ATGCAAATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 519594 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | || || ||||||||||| |||||||| ||||| ||||| Sbjct 519593 GATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCAG 519534 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||||||||| ||||| || || | ||||| |||||| Sbjct 519533 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGACGGTCGGACTCTTTCCGACTACAAC 519474 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 519473 ATTCAAAAGGAGTCAAC 519457 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | | Sbjct 527499 ATGCAGATCTTCGTAAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 527558 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | || || ||||||||||| |||||||| ||||| ||||| Sbjct 527559 GATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCAG 527618 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||||||||| |||||| ||||| | ||||| |||||| Sbjct 527619 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGATGGTCGCACTCTTTCCGACTACAAC 527678 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 527679 ATTCAAAAGGAGTCAAC 527695 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| ||||||| ||||| |||| || || ||||| ||| Sbjct 537485 ATGCAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAGT 537544 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | | || ||| || || ||||||||||| ||||| || || || Sbjct 537545 GACTCGATTGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 537604 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || ||||| ||||| || ||| ||||||| | || || |||||| Sbjct 537605 CAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTATCTGACTACAAC 537664 Query 22399 ATTCAAAAAGAATCCACC 22416 || ||||| || |||||| Sbjct 537665 ATCCAAAAGGAGTCCACC 537682 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| |||| || || || | || || ||||| ||| ||| Sbjct 526587 ATGCAGATCTTTGTCAAGACTCTAACAGGCAAGACCATAACGCTAGAAGTTGAACCCAGT 526646 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || | | || || || ||||| |||||||| |||||||| |||||| Sbjct 526647 GATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAGGGCATTCCACCAGATCAA 526706 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || ||||| || || ||||| | || ||||||||| Sbjct 526707 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTGATTACAAC 526766 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || || | ||| | || | ||| | || || ||| Sbjct 526767 ATTCAAAAGGAGTCAACGCTTCATCTCGTGCTTCGACTCCGTGGTGGT 526814 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||||||||| | ||||| || || |||| | || ||||| ||| Sbjct 526815 ATGCAGATATTTGTTAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 526874 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | | || || || || ||||||||||| |||||||| || || Sbjct 526875 GACTCTATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCAGACCAG 526934 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || || || ||||| |||||| || || | || || |||||| Sbjct 526935 CAACGATTGATCTTCGCAGGAAAGCAGTTGGAGGATGGTCGTACTCTATCTGACTACAAC 526994 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| ||||| || || | || || || |||| ||||| || || Sbjct 526995 ATTCAGAAAGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGG 527041 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361 ||| || ||||| |||||||| || ||||| || || ||||| | || || || ||||| Sbjct 528038 AAAGATACAAGAAAAGGAGGGCATACCACCAGACCAGCAACGAATGATCTTCGCTGGCAA 528097 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||||| |||||| ||||| | ||||| ||||||||||| || ||||| ||| Sbjct 528098 GCAGTTGGAGGATGGTCGCACATTGTCCGACTACAACATTCAGAAGGAATCGACC 528152 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| || |||||||| ||||| || || || ||||| | || || || ||||| Sbjct 518996 AAGATTCATGATAAGGAGGGCATTCCTCCTGACCAGCAACGATTGATCTTCGCTGGCAAG 518937 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||||| |||||| ||||| | ||||| ||||||||||| || ||||| ||| Sbjct 518936 CAGTTGGAGGATGGTCGCACATTGTCCGACTACAACATTCAGAAGGAATCGACC 518883 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || ||||| || || ||||| | || ||||| || || Sbjct 519341 AAGATCCAGGACAAGGAGGGCATCCCACCGGACCAGCAACGATTGATCTTTGCAGGAAAG 519282 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 |||||||| ||| ||||| | ||||| ||||||||||| ||||| || || | || Sbjct 519281 CAGTTAGAAGATGGTCGCACGTTGTCCGACTACAACATTCAGAAAGAGTCGACGCTTCAC 519222 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || | ||| | || || ||| Sbjct 519221 TTGGTGCTTCGACTCCGTGGTGGT 519198 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || || |||||||| || ||||| || || ||||| | || ||||| || || Sbjct 527127 AAGATCCAGGATAAGGAGGGCATCCCACCGGACCAGCAACGATTGATCTTTGCAGGAAAG 527186 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||| |||||| ||||| | ||||| ||||||||||| || || || || | || Sbjct 527187 CAGTTGGAGGATGGTCGCACGTTGTCCGACTACAACATTCAGAAGGAGTCGACGCTTCAC 527246 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || || |||| ||||| || || Sbjct 527247 TTGGTGCTGCGTTTGCGTGGTGG 527269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || || |||||||| || ||||| || || ||||| | || ||||| || || Sbjct 527811 AAGATCCAGGATAAGGAGGGCATCCCACCGGACCAGCAACGATTGATCTTTGCAGGAAAG 527870 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 |||||||| ||| ||||| | ||||| ||||||||||| ||||| || || | || Sbjct 527871 CAGTTAGAAGATGGTCGCACGTTGTCCGACTACAACATTCAGAAAGAGTCGACGCTTCAC 527930 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || | ||| | || || ||| Sbjct 527931 TTGGTGCTTCGACTCCGTGGTGGT 527954 >seq15 Length=1207391 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||| | || || ||||| | || ||||| || || | | Sbjct 831846 ATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAGT 831787 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | || | | ||| |||||| |||||||| ||||| || ||||| |||||| Sbjct 831786 GATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCAA 831727 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| ||||| || ||||| || ||||| ||||| || || ||||||| || || Sbjct 831726 CAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGACTATAAT 831667 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || || || | ||| | ||| | || | || ||||| Sbjct 831666 ATTCAAAAGGAGTCGACACTCCATCTTGTTCTAAGACTACGAGGAGG 831620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419692703498500