Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1077 84.2 4e-11 seq131 84.2 4e-11 >seq1077 Length=20753 Score = 84.2 bits (92), Expect = 4e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 218632 AAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATT 218691 ||||| |||| || | ||||||||||| |||||||| | ||| || | || || Sbjct 5703 AAGCGCAACCAAGTAAAGGAAATTAAGGTGGCTCAGTTGTGCGGTGCCGTGGCAGAGATG 5762 Query 218692 TCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGAC 218751 || |||||| || || ||| | || ||| |||| | || |||| |||||| Sbjct 5763 TCCTCCTACCACCATGGCGAGGTGTCCCTCATGGGCACCATCATTGGACTGGCTCAGGAC 5822 Query 218752 TATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTA 218811 | ||| || |||||| | || || || | ||| | |||||||| ||| | ||||| Sbjct 5823 TTTGTAGGTTCCAACAACCTCAATCTGTTGATGCCCTATGGTCAGTTCGGTACGCGTCTC 5882 Query 218812 TTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTAC 218852 ||||| |||||| ||||||||| | ||||| || || Sbjct 5883 GCCGGTGGCAAGGATTCCGCTTCTGCCCGTTATATTTTCAC 5923 >seq131 Length=238489 Score = 84.2 bits (92), Expect = 4e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 218632 AAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATT 218691 ||||| |||| || | ||||||||||| |||||||| | ||| || | || || Sbjct 5703 AAGCGCAACCAAGTAAAGGAAATTAAGGTGGCTCAGTTGTGCGGTGCCGTGGCAGAGATG 5762 Query 218692 TCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGAC 218751 || |||||| || || ||| | || ||| |||| | || |||| |||||| Sbjct 5763 TCCTCCTACCACCATGGCGAGGTGTCCCTCATGGGCACCATCATTGGACTGGCTCAGGAC 5822 Query 218752 TATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTA 218811 | ||| || |||||| | || || || | ||| | |||||||| ||| | ||||| Sbjct 5823 TTTGTAGGTTCCAACAACCTCAATCTGTTGATGCCCTATGGTCAGTTCGGTACGCGTCTC 5882 Query 218812 TTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTAC 218852 ||||| |||||| ||||||||| | ||||| || || Sbjct 5883 GCCGGTGGCAAGGATTCCGCTTCTGCCCGTTATATTTTCAC 5923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027745932802900