Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5 127 4e-24 >seq5 Length=2931570 Score = 127 bits (140), Expect = 4e-24 Identities = 293/437 (67%), Gaps = 6/437 (1%) Strand=Plus/Minus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||| |||||||| ||| ||| ||||| || ||||| || || | | || | Sbjct 2233371 TGGCTTTCTTCGCGGCCAGTGATGGCATCGTTAATGAAAATCTAACTTTGAATTTTTGTA 2233312 Query 42484 AAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 | ||||| || | || ||||| || || || || || | || | ||| |||| || Sbjct 2233311 ACGAGGTCCA--AATTCCCGAGGCTCGTTGTTTTTATGGAATGCAAGTCGCCGTAGAAAA 2233254 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | | || ||||| ||||| | ||| | | || ||| || |||||| || || || Sbjct 2233253 CATTCATTCTGAAATGTACTCTCTTCTGATTGATACCTACGTCAAGGATCCGGTAGAACG 2233194 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || ||||| || ||||| | ||| |||| || | |||||||| || ||||| Sbjct 2233193 CGACTTTCTGTTTAACGCCATTCAAACGTTGCCGTGTGTTGCTAAGAAGGCCGATTGGGC 2233134 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 || | ||||| | | | | ||| ||| || ||| | ||||| || || | || Sbjct 2233133 TCTTAGGTGGATTGCAAATAAAAAGGCACCGTACGCGGAGCGTCTGGTGGCGTTCGCTGC 2233074 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGG 42780 | |||||| | ||||| || || | || || |||||||||||||||||| || || Sbjct 2233073 TATTGAGGGCGTATTCTTTTCTGGTTCATTTGCTTCCATCTTCTGGCTCAAGAAGCGTGG 2233014 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | || ||||| || |||||||| ||||| || ||||| | || || || || || | Sbjct 2233013 TCTC-ATGCCTGGCCTCACCTTTAGTAACGAGCTGATCAGTCGAGATGAAGGCCTCCACA 2232955 Query 42841 GGGACTTTGCCTGCCTC 42857 ||| ||||| |||||| Sbjct 2232954 CGGATTTTGCATGCCTC 2232938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944257750744000