Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq52 100 2e-16 seq4 84.2 2e-11 >seq52 Length=575441 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||| || |||||||| |||||| ||||||||||| || | Sbjct 519427 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTC-GGA 519485 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| ||||| || ||||| ||||| |||| |||||||||||| || Sbjct 519486 AAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGG 519545 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACT---ATCAGTAGATTC 34076 | | ||||||||| ||| || ||| | | || || | |||| ||| || Sbjct 519546 GATACCCTCTTTGTCTTGAATCTTGGCCTTCA---CATTCTCAATCGAATCACTAGGCTC 519602 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || ||||||||||||||||| Sbjct 519603 AACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 519653 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||| || |||||||| |||||| ||||||||||| || | Sbjct 527725 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 527666 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || ||||| || ||||| ||||| |||| |||||||||||| || Sbjct 527665 AGAGTG-CGACCATCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGG 527607 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACT---ATCAGTAGATTC 34076 | | ||||||||| ||| || ||| | | || || | |||| ||| || Sbjct 527606 GATACCCTCTTTGTCTTGAATCTTGGCCTTCA---CATTCTCAATCGAATCACTAGGCTC 527550 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || || || ||||| ||||| Sbjct 527549 AACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTTACGAAGATCTGCAT 527499 >seq4 Length=3027866 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/227 (68%), Gaps = 18/227 (8%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || ||||| || |||||||||||| |||||||| | || || Sbjct 343648 AGGCGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGT 343707 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||||||||||||| ||||| || || ||||| || || || | | ||| Sbjct 343708 CCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCC 343767 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA---TTCGACC 34086 ||||| ||| |||| | ||||| | ||| |||| ||| | |||||| Sbjct 343768 TTGTCTTGAAT------CTTA---GCCTTCACATTCTCAATAGAATCGGAGGGCTCGACC 343818 Query 34087 ------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || ||||| ||||| || ||||||||||| || ||||| Sbjct 343819 TCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 343865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397029009533800