Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq52 170 5e-37 seq15 145 2e-29 seq4 98.7 2e-15 >seq52 Length=575441 Score = 170 bits (188), Expect = 5e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| ||| |||||||||| ||| || ||||| || || || || | Sbjct 526813 CCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAA 526754 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| || || || || ||||| |||| |||||||||| ||| Sbjct 526753 AGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGGA 526694 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| ||||| ||||| || ||||| || || ||||| || | ||| ||| Sbjct 526693 ATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACT 526634 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||| || || ||||||||||| || |||||||| Sbjct 526633 TCTAGCGTTATGGTCTTGCCTGTTAGAGTCTTGACAAAGATCTGCAT 526587 Score = 167 bits (184), Expect = 6e-36 Identities = 177/232 (76%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || |||| || || ||||||| ||| || ||||| || || |||| Sbjct 526589 CATG-CCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGT 526531 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| || || || ||||| || || || ||||||| |||||| || Sbjct 526530 CGGAAAGAGTGCGGCCATCCTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTG 526471 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| || ||||| ||||| ||||| ||||| || ||||| || || |||||||| | || Sbjct 526470 GTGGAATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTT 526411 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| ||||| || ||||| ||||| ||||||||||| || |||||||| Sbjct 526410 CAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 526359 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| ||| || | |||| ||| ||||| || || || ||||||| Sbjct 527953 CCACCACGGAGTCGAAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAC 527894 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||| || |||||||| || |||||||| ||||||| || || || |||| Sbjct 527893 AACGTGCGACCATCTTCTAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 527834 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| ||||| |||||||| ||||| || || |||| || || Sbjct 527833 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 527774 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 527773 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCAT 527727 Score = 149 bits (164), Expect = 1e-30 Identities = 173/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || || |||| ||| || ||||| || || |||| Sbjct 527729 CATG-CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGT 527671 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| || || || || ||||| || || ||||||| |||||| ||| Sbjct 527670 CGGAAAGAGTGCGACCATCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCG 527611 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||| || ||||| || || || || || ||||| || || || ||||| || | | Sbjct 527610 GTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCT 527551 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| ||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 527550 CAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTTACGAAGATCTGCAT 527499 Score = 143 bits (158), Expect = 6e-29 Identities = 174/236 (74%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || || |||| ||| || ||||| || || |||| Sbjct 519423 CATG-CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGT 519481 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || || ||||| || || ||||| || || ||||||| |||||| ||| Sbjct 519482 CGGAAAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCG 519541 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||| || ||||| || || || || || ||||| || || || ||||| || | | Sbjct 519542 GTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCT 519601 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | || ||||| ||||| ||||||||||| || ||||| || || || ||||| ||| Sbjct 519602 CAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCATGATG 519657 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| | |||||| || || || || || |||||||| ||| Sbjct 527233 TCCTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAG 527174 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || || || |||||| || || ||||||||||| ||||| |||||||| Sbjct 527173 ATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTC 527114 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||||| || || |||| || || || | ||| || |||||||| ||||| ||||| || Sbjct 527113 TCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACA 527054 Query 288463 AATATCTGCAT 288473 ||||| ||||| Sbjct 527053 AATATTTGCAT 527043 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || ||||| | || || || || || || || || |||||||||||| Sbjct 527005 TCTTTCTGAATGTTGTAGTCAGATAGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAG 526946 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || || || ||| || || || || |||||||| ||||| |||||||| Sbjct 526945 ATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 526886 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 |||||||| || || | || || || | ||||| ||||| ||||| || || || || Sbjct 526885 TCTATAGAGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACA 526826 Query 288463 AATATCTGCAT 288473 ||||||||||| Sbjct 526825 AATATCTGCAT 526815 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| || || || || | || || ||||| || |||||||| | Sbjct 526357 CCACCACGAAGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGAC 526298 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| || || || || || ||||| ||||| || || ||| Sbjct 526297 AGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGA 526238 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || || || ||||| ||||| || || || | ||||| | ||| || Sbjct 526237 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACC 526178 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||| ||||||||||| || || || || ||||| Sbjct 526177 TCCAGCGTAATTGTCTTGCCGGTCAGAGTTTTCACAAAAATTTGCAT 526131 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || || |||| || ||| || || || || ||||||| Sbjct 518854 CCGCCACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAC 518913 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || || || || || |||||||||| || || || | || Sbjct 518914 AATGTGCGACCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCAGGAGGA 518973 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| || || || || ||||| || ||||| || || |||| || || Sbjct 518974 ATGCCCTCCTTATCATGAATCTTAGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACC 519033 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||| || |||||||| || || ||||| || ||||||||||| Sbjct 519034 TCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 519080 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || || |||| || ||| || || || || ||||||| Sbjct 528181 CCCCCACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAC 528122 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || || || || || |||||||||| || || || ||| Sbjct 528121 AATGTGCGACCATCCTCCAACTGCTTGCCAGCGAAGATCATTCGTTGCTGGTCTGGTGGT 528062 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || || || || || ||||| || ||||| || || |||| || || Sbjct 528061 ATGCCCTCCTTTTCTTGTATCTTTGCCTTCACTTTCTCTATCGAGTCACTCGGCTCCACC 528002 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||| || |||||||| || || ||||| || ||||||||||| Sbjct 528001 TCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 527955 >seq15 Length=1207391 Score = 145 bits (160), Expect = 2e-29 Identities = 174/235 (74%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || ||||| || || ||||| | || || ||||| |||||||||| Sbjct 831616 CATG-CCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGT 831674 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| || || ||||| || || || || || |||||||| || || |||||| Sbjct 831675 CGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTG 831734 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| ||||| ||||| || |||||||| ||||| ||||| || || ||||| || | | Sbjct 831735 GTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCACTTGGCT 831794 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 | || || || || || || || || || |||||||| || || || |||||||| Sbjct 831795 CAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATTAT 831849 >seq4 Length=3027866 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || |||| || || || || ||||| || || | Sbjct 343639 CCACCACGGAGGCGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGAT 343698 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | | ||||| || || ||||| || || || || || ||||||||||| ||| Sbjct 343699 AAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGA 343758 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || || || || || ||||| || || ||||||||| | || || Sbjct 343759 ATCCCCTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACC 343818 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || ||||| ||||| || || || |||||||| Sbjct 343819 TCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 343865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179550111178200