Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq52 136 4e-27 seq15 114 1e-20 seq1 93.3 4e-14 >seq52 Length=575441 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || |||||| ||||||| ||| || || ||||||||||||||||| | Sbjct 526814 ACCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGA 526755 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||| | |||||| || || |||| | ||||| || || || || Sbjct 526754 AAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGG 526695 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || ||||| || || |||||| ||| | | ||||| || || || Sbjct 526694 AATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAAC 526635 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| ||||||||| || | ||| || || || || ||||| Sbjct 526634 TTCTAGCGTTATGGTCTTGCCTGTTAGAGTCTTGACAAAGATCTGCAT 526587 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||||| ||| || || |||||||||||||| || | | ||||| | || Sbjct 526570 AGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCC 526511 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| || ||| | || | ||||||||||| || ||||| ||||| || ||| Sbjct 526510 TCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCT 526451 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || |||||| ||| | | ||| | || || ||||||| |||| |||| Sbjct 526450 TGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTC 526391 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | ||| || || ||||| ||||| Sbjct 526390 TTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 526359 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || ||||||||||| || || | | |||||| | ||| Sbjct 526342 AGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCT 526283 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| || ||| | || || || |||||||| || ||||| || || || ||| Sbjct 526282 TCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCT 526223 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||| || | || ||||| || | || | ||| Sbjct 526222 TGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTC 526163 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| |||||| || ||||||||||| Sbjct 526162 TTGCCGGTCAGAGTTTTCACAAAAATTTGCAT 526131 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| || |||| |||||||| || ||||||||||| |||| Sbjct 527498 ACCACCACGCAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGA 527439 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || || | ||||||||| || | || | |||||||| || || || Sbjct 527438 TAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGG 527379 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || ||||| ||| ||| ||| | ||| || | | ||||| Sbjct 527378 AATACCCTCCTTATCCTGAATTTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCAC 527319 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||| || |||| || || ||||| |||||||| Sbjct 527318 TTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTCACGAATATTTGCAT 527271 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | ||||||||| |||| ||| || || |||||||||||||| || | Sbjct 527725 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 527666 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || | ||| ||||| ||| | || | |||||||| || || || Sbjct 527665 AGAGTGCGACCATCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 527606 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || ||||| ||||| || || ||| ||| ||| | | ||||| | || || Sbjct 527605 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 527546 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| ||||| | || |||||||| || ||||| Sbjct 527545 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTTACGAAGATCTGCAT 527499 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | ||||||||| |||| ||| || || |||||||||||||| || | Sbjct 519427 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 519486 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || | ||| ||||| ||| | || | |||||||| || || || Sbjct 519487 AGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 519546 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || ||||| ||||| || || ||| ||| ||| | | ||||| | || || Sbjct 519547 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 519606 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| ||||| | || || || || |||||||| Sbjct 519607 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 519653 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || |||||| | |||| |||||| ||||| ||||||||||| || | Sbjct 519198 ACCACCACGGAGTCGAAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGA 519257 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| | |||||| || ||| | || | || |||||||| || || Sbjct 519258 CAACGTGCGACCATCTTCTAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGG 519317 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCA 64394 || || || || || || || || ||| ||| ||| | | |||| |||| |||| Sbjct 519318 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCTATCGAGTCACTCGGC-TCCA 519376 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||| || |||| || || || || |||||||| Sbjct 519377 CCTCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCAT 519425 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | |||||| || |||| |||||||| || ||||||||||| || | Sbjct 518853 ACCGCCACGAAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGA 518912 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || | ||||||||| || | || | || |||||||| ||||| Sbjct 518913 CAATGTGCGACCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCAGGAGG 518972 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCA 64394 ||| || || || || || || || ||| ||| ||| | | |||| |||| |||| Sbjct 518973 AATGCCCTCCTTATCATGAATCTTAGCCTTCACATTCTCTATCGAGTCACTCGGC-TCCA 519031 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||| || || | || || || || || ||||| Sbjct 519032 CCTCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 519080 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | ||||| | |||| |||||| ||||| ||||||||||| || | Sbjct 527041 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGAT 526982 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || | |||||| || || | || | || |||||||| || ||| Sbjct 526981 AGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 526922 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | | |||| || ||||| Sbjct 526921 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATAGAGTCACTGGGCTCCACC 526862 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||| | ||||| || || || ||||| Sbjct 526861 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 526815 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || |||||| | |||| |||||| ||||| ||||||||||| || | Sbjct 527954 ACCACCACGGAGTCGAAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGA 527895 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| | |||||| || ||| | || | || |||||||| || || Sbjct 527894 CAACGTGCGACCATCTTCTAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGG 527835 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCA 64394 || || || || || || || || ||| || ||| | | |||| |||| |||| Sbjct 527834 GATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGC-TCCA 527776 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||| || |||| || || || || |||||||| Sbjct 527775 CCTCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCAT 527727 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || |||| |||||||| || ||||||||||| || | | ||||| | || Sbjct 528167 AAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATC 528108 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || | ||||||||| || | || | || |||||||| || || || || || ||||| Sbjct 528107 CTCCAACTGCTTGCCAGCGAAGATCATTCGTTGCTGGTCTGGTGGTATGCCCTCCTTTTC 528048 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGG 64409 |||||| ||| ||| || ||| | | |||| |||| ||||| || | || | | Sbjct 528047 TTGTATCTTTGCCTTCACTTTCTCTATCGAGTCACTCGGC-TCCACCTCCAACGTAATTG 527989 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| || || | || || || || || ||||| Sbjct 527988 TCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 527955 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | ||||| | |||| |||||| || || ||||||||||| || | Sbjct 527269 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 527210 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || | |||||| || ||| | || | || |||||||| || || Sbjct 527209 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 527150 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCAC 64395 || || || || || || || || ||| || ||| | | |||| |||| ||||| Sbjct 527149 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGC-TCCAC 527091 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || |||| || || || || |||||||| Sbjct 527090 CTCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCAT 527043 >seq15 Length=1207391 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| || || ||||| | ||||| || |||||||| || || || | | Sbjct 831620 CCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAG 831679 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || ||| |||| || | |||||| ||||| | || ||||| || || || || || Sbjct 831680 AGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGT 831739 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| ||||| ||||| |||||| ||||| ||| | | ||||| | || || Sbjct 831740 ATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATCACTTGGCTCAACC 831799 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | |||| ||| || || || | ||| || || |||||||||||| Sbjct 831800 TCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 831847 >seq1 Length=4220646 Score = 93.3 bits (102), Expect = 4e-14 Identities = 172/250 (69%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 153689 GATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCGGTTTTCAAACCACGTTT 153748 ||| | ||| || || || |||| |||| ||||||||| || ||||| | ||||| || Sbjct 1715348 GATGGGATCGGCAGCAGGCCTAGTGCGCAGATAATACATCCCCGTTTTGAGTCCACGCTT 1715289 Query 153749 CCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGCTGCGCTATAAACACGTT 153808 ||| | || | |||| || || | | || | |||||| | || ||| ||| Sbjct 1715288 CCAGGCGTAGAAATGCATACTCGTGATTTTACCGTAGTTGGGCTCCTTCATGTACAGGTT 1715229 Query 153809 AAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAG---TT 153865 || ||||||||||| || ||||| | | ||||| || |||| |||| || || Sbjct 1715228 AAGAGACTGGCTCTGGTCAATGAACGGAGCACGATCAGCTGCCA----AATCGAGTATTT 1715173 Query 153866 TTTACT-GCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCGAT 153924 ||| || | || ||||| || |||||||||| ||||| ||||| || || || | | Sbjct 1715172 TTTTCTGGGGTATCTCCCAAACTGTTTTGTAGAGAGCTTTGATGTCTTCTGGAATTCCGT 1715113 Query 153925 CAATTTTCTG 153934 |||| | ||| Sbjct 1715112 CAATATCCTG 1715103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499601705636000