Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq15 111 2e-19 seq52 96.9 3e-15 >seq15 Length=1207391 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| || |||||| | ||| ||| |||||| | || ||||||| Sbjct 831653 GACTCCTTTTGAATATTATAGTCGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCG 831712 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || || ||||| || || ||||| || |||||||| ||||||| ||||| Sbjct 831713 AAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACG 831772 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | | ||| ||||| | || | ||||| ||||| ||||| || Sbjct 831773 TTCTCAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTA 831832 Query 138601 ACAAAAATCTGCAT 138614 |||||||| ||||| Sbjct 831833 ACAAAAATTTGCAT 831846 >seq52 Length=575441 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||||||||| ||||| || || || || || | || || || | Sbjct 526326 TTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCG 526267 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 | |||||||||| || |||||||| || || || || ||||| ||| | || | || Sbjct 526266 CAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTC-TTGAATCTTCGCCTTC 526208 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | |||||| | | |||||||| | ||| | || || || ||||||||| Sbjct 526207 ACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTCAGAGTT 526148 Query 138598 TTTACAAAAATCTGCAT 138614 || |||||||| ||||| Sbjct 526147 TTCACAAAAATTTGCAT 526131 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | |||| || | |||||||||||||||||||||||||| Sbjct 519426 GCCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGA 519485 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || |||||| | ||||| || | | |||| | |||||| || ||||| || Sbjct 519486 AAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGG 519545 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| |||||||| ||| | || | || | | || | | || | | ||| | Sbjct 519546 GATACCCTCTTTGTC-TTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAA 519604 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||||| || | || || || || || || || ||||| || |||||| Sbjct 519605 CCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCATG 519654 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||||||||||||||||||| | ||| || ||||| | ||| ||||| | Sbjct 526554 TTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCCAATTGCTTACCAG 526495 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| | |||||| ||||| || || || ||||| || || ||| || |||| Sbjct 526494 CAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGGATCTTCGCCTTTA 526435 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | | ||| | | || || || | ||| | || || || || ||||| | Sbjct 526434 CGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCT 526375 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||||||||| Sbjct 526374 TGACAAAAATCTGCAT 526359 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | |||| || | |||||||||||||||||||||||||| Sbjct 527726 GCCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGA 527667 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || ||||| | ||||| || | | |||| | |||||| || ||||| || Sbjct 527666 AAGAGTGCGACCATCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGG 527607 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| |||||||| ||| | || | || | | || | | || | | ||| | Sbjct 527606 GATACCCTCTTTGTC-TTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAA 527548 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || || || || || ||||| || |||||||| Sbjct 527547 CCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTTACGAAGATCTGCAT 527499 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||||||||| || || || | | |||||||| ||||||||||||||| Sbjct 527270 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGA 527211 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| | || || || | | |||| | || || |||||||| || Sbjct 527210 CAACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGG 527151 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| || || | | || | | ||| ||| |||||| Sbjct 527150 GATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCAC 527091 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | ||| | || || |||||||| || || ||||| || |||||| Sbjct 527090 CTCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCATG 527042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496219597368000