Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq52 131 2e-25 >seq52 Length=575441 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || |||| |||||| || | ||| |||||||| ||||| ||||| || Sbjct 527041 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGAT 526982 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||| ||||| ||| |||||||||| ||||| || || || Sbjct 526981 AGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 526922 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | || | | ||| | ||| || Sbjct 526921 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATAGAGTCACTGGGCTCCACC 526862 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || |||||||| || ||||| ||||| |||||||| Sbjct 526861 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 526815 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | |||||| || | ||| |||||||| ||||| ||||| ||| | Sbjct 519199 CCACCACGGAGTCGAAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAC 519258 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| ||| |||| ||| ||||| || |||||||||| ||||| || || || Sbjct 519259 AACGTGCGACCATCTTCTAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 519318 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | || | | ||| | ||| || Sbjct 519319 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACC 519378 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || || || ||||| || || ||||| || |||||| Sbjct 519379 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCATG 519426 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | |||||| || | ||| |||||||| ||||| ||||| ||| | Sbjct 527953 CCACCACGGAGTCGAAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAC 527894 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| ||| |||| ||| ||||| || |||||||||| ||||| || || || Sbjct 527893 AACGTGCGACCATCTTCTAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 527834 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| ||| ||| ||| | | || | | ||| | ||| || Sbjct 527833 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 527774 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || || || ||||| || || ||||| || |||||| Sbjct 527773 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCATG 527726 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || |||| |||||| || | ||| ||||| || ||||| ||||| ||| | Sbjct 527269 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 527210 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| ||| || | ||| ||||| || |||||||||| ||||| || || || Sbjct 527209 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 527150 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| ||| ||| ||| | | || | | ||| | ||| || Sbjct 527149 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 527090 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || || || ||||| || || ||||| || |||||| Sbjct 527089 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCATG 527042 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | ||| | ||| | ||| ||||| |||||||| |||||||| Sbjct 526813 CCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAA 526754 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || | ||| || |||||| | ||||| ||||| ||||| || || Sbjct 526753 AGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGGA 526694 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| || ||| ||| ||| | | || | | || | || ||| Sbjct 526693 ATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACT 526634 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| || ||||| || ||||| ||||||||| Sbjct 526633 TCTAGCGTTATGGTCTTGCCTGTTAGAGTCTTGACAAAGATCTGCATG 526586 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | ||| | ||| | ||| ||||| |||||||| ||||| ||| Sbjct 526585 CCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 526526 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | || || ||||| ||||||| |||||||| || || || Sbjct 526525 AGAGTGCGGCCATCCTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGA 526466 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| || ||| ||| ||| | | || | | || | || ||| Sbjct 526465 ATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACT 526406 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || |||||||| ||||| || |||||||||||||| Sbjct 526405 TCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 526359 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | || | ||| ||||| |||||||| ||||| ||| Sbjct 527725 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 527666 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | |||||| ||||| ||||||| ||||||||||| || || Sbjct 527665 AGAGTGCGACCATCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 527606 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| ||||| || || ||| | | || | | || || ||| || Sbjct 527605 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 527546 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || ||||| || || ||||| || |||||||| Sbjct 527545 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTTACGAAGATCTGCAT 527499 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||| || ||||| || | ||||| ||| || | ||| || ||| Sbjct 537681 GTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAACTGCTTGCCA 537622 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||||||| ||||| || || || ||||||||||||||| ||| || ||| Sbjct 537621 GCGAAGATCAATCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTC 537562 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | | ||| | ||| || || | || | ||||||||||| ||||| Sbjct 537561 ACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTTAGAGTC 537502 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 537501 TTCACGAAGATCTGCAT 537485 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | ||| | || | || ||||| |||||||| || || || | Sbjct 526357 CCACCACGAAGTCGGAGCACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGAC 526298 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | ||| || || || |||| | || ||||| || || || Sbjct 526297 AGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGA 526238 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| || ||| ||| | | || | ||||| | || || Sbjct 526237 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACC 526178 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||||||||||||||| |||||||| ||||| Sbjct 526177 TCCAGCGTAATTGTCTTGCCGGTCAGAGTTTTCACAAAAATTTGCAT 526131 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | || | ||| ||||| |||||||| ||||| ||| Sbjct 519427 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 519486 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || | |||||| ||||| ||||||| ||||||||||| || || Sbjct 519487 AGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 519546 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| ||||| || || ||| | | || | | || || ||| || Sbjct 519547 ATACCCTCTTTGTCTTGAATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACC 519606 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||| | || || ||||| || || || ||||| || |||||| Sbjct 519607 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCATG 519654 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||| | ||| | || || || ||||| || ||||| || Sbjct 537256 TCCACCACGAAGACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGA 537197 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| ||| || | ||| ||||| || |||||| || |||||||| || || Sbjct 537196 CAAGGTGCGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGG 537137 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| ||| | | || ||| | | || | | ||| | ||| | Sbjct 537136 AATGCCCTCCTTGTCC-TGAATCTTTGCCTTCACATTCTCTATTGAGTCACTGGGCTCCA 537078 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | |||||||| |||| ||| || || || || ||||| Sbjct 537077 CCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 537029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || ||||| ||||| ||| || |||||| ||| || | ||| || ||| Sbjct 518884 GTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCCAACTGCTTGCCA 518943 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 ||| |||||||||| ||||| || ||||| ||||||||||| || Sbjct 518944 GCGAAGATCAATCGTTGCTGGTCAGGAGGAATGCCCTCCTTATC 518987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475459788056000