Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq52 107 2e-18 seq15 96.9 3e-15 seq4 95.1 1e-14 >seq52 Length=575441 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || ||||| |||||||| || ||||| || | ||| | ||| || Sbjct 526340 CACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTC 526281 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||| || || || || | || | |||||||||||||| |||||||| || || ||||| Sbjct 526280 CAACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTG 526221 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| || || | || | |||||| | || || || || |||| || || Sbjct 526220 AATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTT 526161 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 |||||| |||||||| |||||||||||||||| Sbjct 526160 GCCGGTCAGAGTTTTCACAAAAATTTGCATCG 526129 Score = 105 bits (116), Expect = 6e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| |||||||| |||||||| || || || ||| | || ||| || Sbjct 526568 CACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCCTC 526509 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 |||||| || || || | ||||| || |||||||| || ||||||||||| |||||||| Sbjct 526508 CAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTG 526449 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || || | || | || | | ||| | || ||||| || || | || | Sbjct 526448 GATCTTCGCCTTTA-CGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCT 526390 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||||||||||| || |||||||| |||||| Sbjct 526389 TGCCGGTTAGAGTCTTGACAAAAATCTGCATC 526358 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | ||| || || || || || ||||||||||| || || || Sbjct 537711 CCTCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAT 537652 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| ||||| || || || ||| | ||||||||||||||||| || ||| Sbjct 537651 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGGGGA 537592 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || ||| || | || | || | | ||| | ||| || Sbjct 537591 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCA-CGTTCTCAATCGAGTCACTGGGCTCCAC 537533 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || || || | ||||||||||||||||| || || || || ||||| ||| || Sbjct 537532 CTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATTCCGCCAC 537477 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | ||| ||||| || || |||||||||||||| || || || Sbjct 537258 ATTCCACCACGAAGACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCA 537199 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| ||||| || ||||| || | |||| |||||||| || || Sbjct 537198 GACAAGGTGCGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGT 537139 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || ||||| ||| || | |||| | ||| | ||| Sbjct 537138 GGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCTATTGAGTCACTGGGCTCC 537079 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344 || || || || | |||||||| || | ||| || || || ||||||||| || Sbjct 537078 ACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCATCACG 537025 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| || || || || |||||||| || || || || ||| ||| | | || ||| Sbjct 518871 CACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCG--GACAATGTGCGACCATCC 518928 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 ||||| || || || ||| | ||||||||||||||||| || |||||||| || ||||| Sbjct 518929 TCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCAGGAGGAATGCCCTCCTTATCA 518988 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 ||||| || || | |||| | ||| | ||| || || | |||| || Sbjct 518989 TGAATCTTAGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTC 519048 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || || ||||| || ||||| Sbjct 519049 TTCCCAGTTAGCGTCTTCACAAATATCTGCAT 519080 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| || ||||||||| | ||||||||||||||||| || |||||||| || || Sbjct 526970 ATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTT 526911 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 || || || || || | || | |||| | ||| | ||| || || | || | Sbjct 526910 GTCCTGGATCTTCGCCTTCA-CGTTCTCTATAGAGTCACTGGGCTCCACCTCCAAGGTGA 526852 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||| || ||||| ||||| || ||||| Sbjct 526851 TGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 526815 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || ||||| || ||||| || || || || ||| | || | ||| ||||| || Sbjct 527245 TGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCCTCCAACTGC 527186 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 |||||||| | |||||||||||||||||||| || ||||| || ||||| || || || Sbjct 527185 TTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTC 527126 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | |||| | ||| | ||| || || | |||| || || || || Sbjct 527125 GCCTTCA-CGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGT 527067 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| |||||||| Sbjct 527066 CAGCGTCTTCACAAATATTTGCAT 527043 >seq15 Length=1207391 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 45105 TATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTA 45164 ||||| || ||||| || || || | || ||||| || || || |||||||| |||||| Sbjct 831611 TATTTCATGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTA 831670 Query 45165 TAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGG 45224 || ||| || || || ||||| || || || ||| | || | ||||| || Sbjct 831671 TAGTCGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGA 831730 Query 45225 TCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGA 45283 || || || || || ||||| ||||| |||||| ||| | || | || | || || Sbjct 831731 TCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTA-CGTTCTCAATGGAATCACT 831789 Query 45284 AGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||| || || || || | ||||| || || ||||| || |||||||||||||| Sbjct 831790 TGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCAT 831846 >seq4 Length=3027866 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || ||||| ||||| || ||||| ||||| Sbjct 343639 CCACCACGGAGGCGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGAT 343698 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| |||||||| || || || | || | || || ||||| || ||| Sbjct 343699 AAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGA 343758 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || |||||||| || || | || | | ||||| | |||||| Sbjct 343759 ATCCCCTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACC 343818 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | ||||||||||| |||||||| |||||||| ||||| Sbjct 343819 TCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 343865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451964214724000