Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 116 5e-21 >seq1 Length=4220646 Score = 116 bits (128), Expect = 5e-21 Identities = 350/540 (65%), Gaps = 3/540 (1%) Strand=Plus/Minus Query 116742 ACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC 116801 || ||| ||||||| ||||||||||| || || || ||||| || || ||||||||| Sbjct 1713914 ACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATC 1713855 Query 116802 CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATC 116861 |||| |||| |||||| | || || || ||||||| ||| | || | ||| Sbjct 1713854 CCGAGCGCGAATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATC 1713795 Query 116862 CGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGA---CCAGCCTGGTT 116918 || ||||| ||||| || || | || | | || || | || |||| | Sbjct 1713794 CGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTATTGCCTCCCTGATC 1713735 Query 116919 TACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCC 116978 ||||| | || || ||| || || |||||||| || | | ||||| || | || Sbjct 1713734 GACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCC 1713675 Query 116979 ATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACC 117038 ||| || || ||| | || ||| || || ||| | | | ||| || || Sbjct 1713674 ATTAGTTCCAGCGATAAACGTATTCTTGCTTCGGATGCAGTGAACATTGAGACCGATCCC 1713615 Query 117039 CCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGA 117098 || || || ||||| |||| || | |||| || | || || || ||||| Sbjct 1713614 ACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACT 1713555 Query 117099 GTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTT 117158 ||| |||| ||| | | || ||||| ||||| || || || || ||||| || Sbjct 1713554 GTCGTCCTTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATT 1713495 Query 117159 GAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAA 117218 || || || |||| ||||| || ||| || ||||| || ||||||||| | Sbjct 1713494 AAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAAT 1713435 Query 117219 GACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 ||| | | ||||| || |||||||| |||||||| |||||||||||||| || || Sbjct 1713434 AGCAGCGTCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGG 1713375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613454285004000