Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 132 8e-26 seq5 104 4e-17 >seq1 Length=4220646 Score = 132 bits (146), Expect = 8e-26 Identities = 310/465 (67%), Gaps = 2/465 (0%) Strand=Plus/Minus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 |||| || ||||||| |||| | | |||||||| | | |||||| ||||| || Sbjct 1715365 TTGTTGACAGTGAACTTGATGGGATCGGCAGCAGGCCTAGTGCGCAGATAATACATCCCC 1715306 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959 || || || || || ||| |||| | ||||| | | ||| | |||||| Sbjct 1715305 GTTTTGAGTCCACGCTTCCAGGCGTAGAAATGCATACTCGTGATTTTACCGTAGTTGGGC 1715246 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCC 204019 || ||||| | ||| ||||||||||| ||||| ||||| || || ||||| || ||| Sbjct 1715245 TCCTTCATGTACAGGTTAAGAGACTGGCTCTGGTCAATGAACGGAGCACGATCAGCTGCC 1715186 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079 | || || || | ||||| | |||||||| || || ||| | | || || ||| | Sbjct 1715185 AAATCGAGTATTTTTTTCTGGGGTATCTCCCAAACTGTTTTGTAGAGAGCTTTGATGTCT 1715126 Query 204080 TGAGGCACATCTTCCCACGTCCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138 | || | | || | |||||| | || || | | | || | | || || Sbjct 1715125 TCTGGAATTCCGTCA-ATATCCTGAATGGATCCCTGATTAGAAATGATCGCCGTCTTCAG 1715067 Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 || ||| ||| ||||| | ||||| || || | || ||| | ||| | || || Sbjct 1715066 CTGATCCGACCAAATGCCAAGATCAATCAGATCACGAAGCATGTGCGAGTTAACAATTTG 1715007 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 ||||| || |||||||| | || || || | |||| |||| | ||||||| || ||| Sbjct 1715006 GAAGTCGCCCGACAGCACACGACGAGTAAATACGTTGCTGGTTACTGGTTCGGTCGACTC 1714947 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGC 204303 |||| || | ||||||||| || |||||||||||||||||| Sbjct 1714946 TGTGTTACCCAGAATCTGAGCCGTCGAGGCCGTGGGCATGGGAGC 1714902 >seq5 Length=2931570 Score = 104 bits (114), Expect = 4e-17 Identities = 340/525 (65%), Gaps = 5/525 (1%) Strand=Plus/Plus Query 159911 TTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTG 159970 ||||| | |||||| ||||| || ||| || || || || ||| ||| | |||||| Sbjct 2232930 TTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTA 2232989 Query 159971 GACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA 160030 | | ||||||| ||||||| |||||| |||||||| || |||| ||||| | | Sbjct 2232990 CTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAA 2233049 Query 160031 CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090 || ||| || | ||||| | || || |||||||| || | ||| | | | || Sbjct 2233050 CCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCC 2233109 Query 160091 TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGC 160150 || | | ||||||| ||||| || |||||||| || | ||||||| || Sbjct 2233110 TTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAA-CGT 2233168 Query 160151 TCGAC-GGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAG 160209 | || ||||||||||| ||| | || | |||||||| ||| ||||||| Sbjct 2233169 TTGAATGGCGTTAAACAGAAAGTCGCGTTCTACCGGATCCTTGACGTAGGTATCAATCAG 2233228 Query 160210 CTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGT 160269 ||||||||||| | || | ||||| | ||| | || | || ||| | Sbjct 2233229 AAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAACG 2233288 Query 160270 CGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCC 160329 ||||| || || ||||| | || | | ||||| ||||||| | || Sbjct 2233289 AGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCC 2233348 Query 160330 GTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAG 160389 || |||||| ||||||||||| || | || ||||| || | |||| | | || || Sbjct 2233349 ATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAG 2233408 Query 160390 TCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTC 160434 | ||||||||| || | || | || |||||||| || || Sbjct 2233409 AC---TTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTC 2233450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795086617864000