Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq52 138 1e-27 >seq52 Length=575441 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 |||||| | | ||| | ||| || || | || |||||||||||| |||||||| || Sbjct 537712 GCCTCCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 537653 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 ||| ||||| | || || | ||||||||| ||||| ||||| || |||||||| | || Sbjct 537652 TAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGGGG 537593 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || |||||||||| |||||| ||| | || | | || ||| || | ||||| Sbjct 537592 AATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCAC 537533 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||| |||||||| || || || || || ||||| |||||| Sbjct 537532 CTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 537484 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | ||||||| ||||| || | || ||| || || || |||||||| | Sbjct 527043 TGCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAG 526984 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||||||| || | || || | |||||| || ||||| ||||| || |||||||| | | Sbjct 526983 ATAGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTG 526924 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| ||||||| ||| | || | | | ||| || | |||| Sbjct 526923 GAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATAGAGTCACTGGGCTCCA 526864 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || ||||||||||| || ||||| Sbjct 526863 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 526815 Score = 129 bits (142), Expect = 7e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | ||||||| ||||| || | || |||||| || || |||||||||| Sbjct 527271 TGCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGG 527212 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | ||||| | || || | |||||| || || || ||||| || |||||||| | | Sbjct 527211 ACAACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTG 527152 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||| ||| ||||||| ||| | || | | || ||| |||| |||| Sbjct 527151 GGATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCA 527092 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||| || || || || |||||||| || ||||| |||||||| Sbjct 527091 CCTCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCAT 527043 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || ||||||||||| | ||||| | || || | |||||| || || || Sbjct 519234 CTCTTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCTTCTAACTGCTTTCCTGCAAA 519293 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || |||||||| | || | || |||||||||| ||||||| ||| | | Sbjct 519294 GATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 519353 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| |||| ||||| |||| ||| || || || || |||||||| || || Sbjct 519354 CTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCAC 519413 Query 46582 AAAGATTTGCAT 46593 ||| |||||||| Sbjct 519414 AAATATTTGCAT 519425 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || ||||||||||| | ||||| | || || | |||||| || || || Sbjct 527918 CTCTTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCTTCTAACTGCTTTCCTGCAAA 527859 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || |||||||| | || | || |||||| ||| ||||||| ||| | | Sbjct 527858 GATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTT 527799 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| |||| ||||| |||| ||| || || || || |||||||| || || Sbjct 527798 CTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCAC 527739 Query 46582 AAAGATTTGCAT 46593 ||| |||||||| Sbjct 527738 AAATATTTGCAT 527727 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | || ||||||||| || ||||||||||| |||||||| | || || Sbjct 526568 CACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCCTC 526509 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||||| || || || ||||| ||||||||||| | || | || ||||| || Sbjct 526508 CAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTG 526449 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | || ||||| | ||| || || | ||| ||||| || Sbjct 526448 GATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTT 526389 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || ||||| || ||||| Sbjct 526388 GCCGGTTAGAGTCTTGACAAAAATCTGCAT 526359 Score = 109 bits (120), Expect = 6e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||||||||| | ||||| | || || | ||||||||| ||||| Sbjct 518890 TCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCCAACTGCTTGCCAGCGAAG 518949 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG-ATCTTCTTCTTGAGCGT 46521 ||||| || |||||||| | || | || |||||| | |||| ||||| ||| | | Sbjct 518950 ATCAATCGTTGCTGGTCAGGAGGAATGCCCTCCTTAT-CATGAATCTTAGCCTTCACATT 519008 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| |||| ||||| |||| ||| || || || || || ||||| || || Sbjct 519009 CTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCAC 519068 Query 46582 AAAGATTTGCAT 46593 ||| || ||||| Sbjct 519069 AAATATCTGCAT 519080 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || | ||||| | || || | |||||| || || || Sbjct 537219 TCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGCTTTCCCGCAAAG 537160 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||| ||||| || | || | || |||||||||| ||||| ||| | || Sbjct 537159 ATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTC 537100 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | ||| || | ||||| |||| ||||| |||||||| |||| || || || Sbjct 537099 TCTATTGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCAGTCAAAGTCTTCACG 537040 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 537039 AAGATTTGCAT 537029 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||||||||| | ||||| | || || | ||||||||| ||||| Sbjct 528145 TCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCCAACTGCTTGCCAGCGAAG 528086 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| || |||||||| | || | || |||||| || ||||| ||| | || Sbjct 528085 ATCATTCGTTGCTGGTCTGGTGGTATGCCCTCCTTTTCTTGTATCTTTGCCTTCACTTTC 528026 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| |||| ||||| |||| ||| || || || || || ||||| || ||| Sbjct 528025 TCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCACA 527966 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 527965 AATATCTGCAT 527955 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || ||||||||||| ||||| || |||| || | ||| ||||| || || Sbjct 519462 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAA 519521 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | ||| ||||| ||||| ||| | | Sbjct 519522 GATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATT 519581 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || || | || || || | ||||| || || || || ||||| || || Sbjct 519582 CTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCAC 519641 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 519642 AAAGATTTGCAT 519653 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || ||||||||||| |||||||| | || || | ||| ||||| || || Sbjct 527690 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCCTCCAACTGTTTGCCAGCAAA 527631 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | ||| ||||| ||||| ||| | | Sbjct 527630 GATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATT 527571 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || || | || || || | ||||| || || || || ||||| || || Sbjct 527570 CTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTTAC 527511 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 527510 GAAGATCTGCAT 527499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565189648188000