Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq15 125 7e-24 seq52 118 1e-21 >seq15 Length=1207391 Score = 125 bits (138), Expect = 7e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 ||| ||||||||| || || || || ||||| || |||||||| ||| | || || ||| Sbjct 831851 AAATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGC 831792 Query 38299 CCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 | | || | | | |||| | |||| |||||||| |||||||||||||| || | Sbjct 831791 CAAGTGATTCCATTGAGAACG-TAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCA 831733 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 || ||||| ||||| || | ||| || || ||| |||| |||| ||| || ||| |||| Sbjct 831732 GATCAACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGAC 831673 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || || || |||||||| |||| || ||| | || || Sbjct 831672 TATAATATTCAAAAGGAGTCGACACTCCATCTTGTTCT 831635 >seq52 Length=575441 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || ||||| ||||| ||||| ||||||||| | || || ||| ||| Sbjct 526815 ATGCAGATATTTGTTAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 526874 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || |||| ||||| ||||| ||||| | ||||| Sbjct 526875 GACTCTATAGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCAGACCA 526933 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| || || ||| |||| || | || || || |||||||| Sbjct 526934 GCAACGATTGATCTTCGCAGGAAAGCAGTTGGAGGATGGTCGTACTCTATCTGACTACAA 526993 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || || || ||||||| || ||||||||||||||| | || ||| Sbjct 526994 CATTCAGAAAGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 527042 Score = 116 bits (128), Expect = 4e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || |||||||| ||||| | || || ||| ||| Sbjct 537484 AATGCAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAG 537543 Query 38303 CGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||| | || |||| | || | ||| |||| ||||| ||||| |||||| | |||| Sbjct 537544 TGACTCGATTGAGAACG-TGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGACC 537602 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || | || | ||| ||||| ||| |||| || | |||||||| ||||||| Sbjct 537603 AGCAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTATCTGACTACA 537662 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || || | ||||| ||| Sbjct 537663 ACATCCAAAAGGAGTCCACCCTTCACCTTGTGCTTCGT 537700 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| ||||| || || || || |||||| |||| || ||| | | Sbjct 527499 ATGCAGATCTTCGTAAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 527558 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | || || | | || | || || | ||||||||||| || || | || || Sbjct 527559 GATTCGATTGAGAATG-TGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCA 527617 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || ||||||||| |||| || | ||||| || ||||||||| Sbjct 527618 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGATGGTCGCACTCTTTCCGACTACAA 527677 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| |||||||| | ||||| || | ||||| ||| || | || ||| Sbjct 527678 CATTCAAAAGGAGTCAACGCTTCACCTAGTGCTTCGTCTGCGTGGTGGC 527726 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || |||||||| ||||| | || || ||| ||| Sbjct 537029 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAAACAATCACACTGGAGGTGGAGCCCAGT 537088 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | || | ||| || | ||||| ||||| ||||| | || || Sbjct 537089 GACTCAATAGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCAG 537148 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | ||||| || ||| |||| || | |||||| | ||||||||| Sbjct 537149 CAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAAC 537208 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || ||| | ||||| ||| Sbjct 537209 ATCCAAAAGGAATCCACTCTTCATCTTGTGCTCCGT 537244 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || ||||| || || || || |||||| |||| || ||| | | Sbjct 519653 ATGCAAATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 519594 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | || || | | || | || || | ||||||||||| || || | || || Sbjct 519593 GATTCGATTGAGAATG-TGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCA 519535 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || ||||||||| |||| |||| || || || ||||||||| Sbjct 519534 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGACGGTCGGACTCTTTCCGACTACAA 519475 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| |||||||| | ||||| || | ||||| ||| || | || ||| Sbjct 519474 CATTCAAAAGGAGTCAACGCTTCACCTAGTGCTTCGTCTGCGTGGTGGC 519426 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || || ||||| || || || || || || | || || ||| | | Sbjct 527043 ATGCAAATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 527102 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || |||| || || ||||| || || | ||||| Sbjct 527103 GACTCGATAGAGAACG-TGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGACCA 527161 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | || || || ||| |||| || | ||||| | ||||||||| Sbjct 527162 GCAACGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAA 527221 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || ||||| ||||||| || ||||||||||||||| | || ||| Sbjct 527222 CATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 527270 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || ||||| || || || || || || | || || || | | | Sbjct 527271 ATGCAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAGC 527330 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | ||||| | || || ||||| ||||| | || || Sbjct 527331 GACACAATTGAGAATGTGAAGGCCAAAATTCAGGATAAGGAGGGTATTCCGCCTGATCAG 527390 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| ||| |||| || | || ||||| ||||||||| Sbjct 527391 CAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCAGACTACAAC 527450 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || |||||| |||| || || | ||||| ||| || | || || Sbjct 527451 ATTCAGAAGGAATCGACCCTTCACCTTGTGCTTCGTCTGCGTGGTGG 527497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500129660096000