Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3 201 4e-46 seq1635 161 4e-34 seq15 114 5e-20 seq280 96.9 1e-14 seq217 91.5 6e-13 seq299 86.0 2e-11 seq196 86.0 2e-11 >seq3 Length=3262281 Score = 201 bits (222), Expect = 4e-46 Identities = 455/671 (68%), Gaps = 20/671 (3%) Strand=Plus/Plus Query 450941 TTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAGAAATTATAGCAAATGACCAAGGA 451000 |||||| |||| ||||||| | |||| ||| ||| ||||| || ||||| |||||||| Sbjct 406192 TTTTCA-GTGTTGGTGTTTTCAAAAACGGACGTGTTGAAATCATTGCAAACGACCAAGGC 406250 Query 451001 TCACGAACTACTCCTTCATGGGTAAGTTTTACGGATTCAG---AAAGACTTTTAGGGCAA 451057 |||| ||||| || | || || | | | | || |||| | || | Sbjct 406251 AACCGAATAACTCCATCTTATGTTGCCTTCTCTGGTGACGGTGAACGACTGATTGGTGAC 406310 Query 451058 GCTGCTAAA--TCAATGGTAAATTCAAATGCCAAAAACACAGTATATGATGCTAAACGTT 451115 ||||| ||| ||||| | | ||| ||| | || || || | | ||| || |||||| Sbjct 406311 GCTGCAAAAAATCAATTG--ACTTCGAATCCTAAGAATACTTTGTTTGACGCCAAACGTC 406368 Query 451116 TAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGAGAAAAAATTCTTTTCTTATG 451175 | || || ||| ||||||||| | ||| |||| || | ||| || | | Sbjct 406369 TCATCGGTCGTGATTATGATGATAAAGATGTGCAAAGCGATATCAAACGCTACCCGTTCA 406428 Query 451176 ATGTAGTAAATCAAAAAGGA-AAGCCCTATATTCAAGTA-AATTATAAA-GGTGAAACTA 451232 | || | || ||| || | || || ||||| ||||| || || | || | || | Sbjct 406429 AAGTGATCAA-CAAGAATAACAAACCGTATATGCAAGTTCAAGTAGGGACGGAGGAA--A 406485 Query 451233 AAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAG 451292 || || || || || || |||| |||||||||||| ||||||||| |||| || | Sbjct 406486 AAGGGTTCGCCCCCGAGGAGGTTTCGGCTATGGTTCTTAGTAAAATGAAGGAAATTGCTG 406545 Query 451293 AACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATG 451352 | ||| |||| || ||||||| |||| || | ||||| || || || ||||||| Sbjct 406546 AGGCCTATCTTGGCACTGCAGTTACGCATGCTGTTGTCACTGTGCCTGCCTACTTCAATG 406605 Query 451353 ATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAA 451412 | || ||||| ||||| ||||||||||| || ||||||||| | | ||| | || | Sbjct 406606 ACGCCCAACGTCAAGCGACTAAAGATGCTGGTGCCATTGCTGGTCTGACTGTGTTGCGGA 406665 Query 451413 TTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAG 451472 |||| |||||||| || |||||||| | || ||||| | ||| || |||||| || Sbjct 406666 TTATCAATGAACCAACCGCAGCTGCGATCGCCTATGG-GTTGGACAA--AAAAGACAC-- 406720 Query 451473 AAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTT 451532 ||||| ||||| | || |||||| | ||||| || || || || | || Sbjct 406721 -TGAAAAGAATATCCTCGTGTTTGATCTGGGTGGTGGCACCTTCGACGTCTCCCTCCTGA 406779 Query 451533 CAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTG 451592 |||| || |||| || |||||||| || |||| ||| || |||||||| || |||| Sbjct 406780 CAATCGACAATGGTGTGTTTGAAGTTGTTGCGACCAGTGGCGACACTCATCTTGGTGGTG 406839 Query 451593 AAGATATTGAT 451603 |||| ||||| Sbjct 406840 AAGACTTTGAT 406850 >seq1635 Length=10392 Score = 161 bits (178), Expect = 4e-34 Identities = 460/695 (66%), Gaps = 23/695 (3%) Strand=Plus/Minus Query 450912 TAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAA 450971 |||| ||||| |||||| | ||||| || | ||||| || || || ||| | || | Sbjct 6369 TAGCTATTGGCATTGATTTGGGAACGACTTACTCATGCGTTGGAGTCCTTCAACACGGCA 6310 Query 450972 ATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTA 451031 | || |||||||| || ||||| || || || || || || | ||| ||| | Sbjct 6309 AGGTGGAAATTATTGCCAATGAGCAGGGTAACCGCACAACGCCCAGTTATGTAGCTTTCA 6250 Query 451032 CGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAA 451089 ||||| |||| | || | || | ||||| || |||| | || || ||| Sbjct 6249 CGGATGAAGAACGTCTCATTGGTGATGCTGCAAAGAATCAGGCGGCCATG--AACCCCAC 6192 Query 451090 AAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTAT---GATGATGATACTGT 451146 || || |||| |||||| || ||| |||| || || ||| ||||| || | ||| Sbjct 6191 CAATACCGTATTTGATGCAAAGCGTCTAATCGGGCGCTGTTATATGGATGAGGA-AGTGT 6133 Query 451147 ACAAAAAGAGAAAAAATT--CTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTAT 451204 | | | | || || | ||| | ||| ||||| |||| ||||| | Sbjct 6132 ATAGCGATATGAAGCGTTGGCCATTCA----AGGTAATAAATTCTGAAGGGAAGCCGAAG 6077 Query 451205 ATTCAAGTAAATTATAAAGGTGAAACTAAA-ACTTTTGCTCCTGAAGAAATTTCATCTAT 451263 || |||| | | ||||| || ||| |||| | | |||| || || ||||| || Sbjct 6076 ATCGAAGTGGAACACTGCGGTGAGACGAAACACTTCTT-TGCTGAGGAGATCTCATCCAT 6018 Query 451264 GGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGC 451323 ||| || || ||||| |||||||| |||| ||| | || || | |||||| Sbjct 6017 GGTGCTGCTGAAGATGAAGGAAACAGCGGAACGGTATTTGGGCGAGAAGGTAAATGATGC 5958 Query 451324 AGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG 451383 || || || || || ||||| |||||||||| || || ||||| || | |||||| || Sbjct 5957 TGTGATCACGGTACCGGCTTACTTCAATGATGGTCAGCGTCAAGCCACGATAGATGCCGG 5898 Query 451384 ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGC 451443 | | || || ||||| ||||| || || || |||||||| || |||||||||||| | || Sbjct 5897 AAAAATAGCGGGTTTGAATGTGCTGCGCATCATTAATGAGCCAACAGCAGCTGCTATTGC 5838 Query 451444 ATATGGACTAGGAAAATCAAAAGAAAC-AGAAG-aaaaaaaTATTTTAGTATTTGATTTT 451501 ||| || || ||| ||| |||| | | ||| || ||| | | | || ||||| Sbjct 5837 ATACGGTCT-GGA----CAAGAGAATCGACAAGCAACGCAATTTGCTCATCTTCGATTTG 5783 Query 451502 GGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAG 451561 || || || || ||| ||| || | || ||||| |||| |||||| | || ||| Sbjct 5782 GGCGGTGGTACCTTCGATGTGTCTATATTGTCCATTGAGAATGGAGTATTTAAGGTGAAG 5723 Query 451562 GCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 | || | ||||| ||||| ||||| ||||| || Sbjct 5722 TCGACTGACGGTGACACTCACCTAGGTGGTGAGGA 5688 >seq15 Length=1207391 Score = 114 bits (126), Expect = 5e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 |||||| | ||||| ||||| || || ||||| ||||| || || ||||| ||||| || Sbjct 831849 ATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCA 831790 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 |||| |||||| | ||| |||||| ||||| || || ||||| || || ||| Sbjct 831789 AGTGATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGAT 831730 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 |||||||| | || ||| | || || || | || || || | ||| | | || ||| Sbjct 831729 CAACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGACTAT 831670 Query 391227 AATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 |||||| | ||||| | ||||| || | || ||||||| ||||| Sbjct 831669 AATATTCAAAAGGAGTCGACACTCCATCTTGTTCTAAGACTACGAGGA 831622 >seq280 Length=90519 Score = 96.9 bits (106), Expect = 1e-14 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 ||| | || ||||||||||| || | || ||||| || ||||||| ||| | || Sbjct 41055 GAACAGATCTCATCTATGGTGCTGTCCAAGATGAAGGAGGCAGCAGAGGTGTATTTGGGC 40996 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 || || || || |||||||| || || || || || |||| | |||||||| Sbjct 40995 AAGGAGGTAACAGACGCGGTAATTACAGTGCCAGCGTACTTTAATGTTAATCAACGGCAG 40936 Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 | || | |||||||||| | | || ||||||||||| || || || | ||||| || Sbjct 40935 ACCACAATAGATGCAGGAAAATTGGCGGGTTTAAATGTGCTGCGTCTTGTCAATGAGCCA 40876 Query 451427 ACAGCAGCTGCTCTAGCATATGG 451449 ||||||||||| | || ||||| Sbjct 40875 ACAGCAGCTGCCATTGCCTATGG 40853 >seq217 Length=114020 Score = 91.5 bits (100), Expect = 6e-13 Identities = 192/284 (68%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| ||||| || ||||| || ||||||||||| || ||||| || || | ||||| Sbjct 78653 ATGCGGTAATCACAGTTCCAGCATATTTCAATGACAGCCAGCGGCAGGCGACGATAGATG 78712 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || | || || || |||||||| | || || | ||||| || ||||||||||| Sbjct 78713 CCGGGAAAATAGCAGGGTTAAATGTGTTGCGGATCGTCAATGAGCCCACAGCAGCTGCCA 78772 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499 | |||||||| | |||||| || | || ||| | | || ||||||| Sbjct 78773 TTGCATATGG-TTTGGAAAAACAGTCCTCCTCGCAG--CGTAATGTGCTCGTCTTTGATT 78829 Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAA 451559 | ||||| || || ||| || | || || || | ||| | |||||| |||| Sbjct 78830 TGGGTGGTGGCACCTTCGATGTGTCCATCCTGTCCATCAAGGATAGAACATTTGAGGTAA 78889 Query 451560 AGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 |||| || | ||||| || || || || || ||||| ||||| Sbjct 78890 AGGCGACTGACGGTGACACCCACCTGGGTGGCGAAGACTTTGAT 78933 >seq299 Length=85462 Score = 86.0 bits (94), Expect = 2e-11 Identities = 153/216 (71%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATATATTGG 451305 || ||||| || || ||||| || |||||| ||||| ||||| ||||| || | || Sbjct 12482 GAGGAAATCTCGTCCATGGTACT-ACTAAAGATGAAGGAAACTGCAGAGGCGTACTTGGG 12540 Query 451306 TTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCA 451365 || || |||||||| || || || || ||||| ||||| || || || || Sbjct 12541 CAAGAAGGTAACCGATGCAGTCATCACGGTGCCGGCTTACTTCAACGACAGTCAGCGTCA 12600 Query 451366 AGCAACTAAAGATGCAGG-AC-ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 ||||| || ||||| || || |||| | || | ||||| || || ||||||||||| Sbjct 12601 GGCAACGAAGGATGCGGGCACGATATCG--GGCATGAATGTGCTGCGTATTATTAATGAG 12658 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 || |||||||| ||| | || || || || ||| || Sbjct 12659 CCGACAGCAGCCGCTATCGCCTACGG-CTTGGATAA 12693 >seq196 Length=131746 Score = 86.0 bits (94), Expect = 2e-11 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 451234 AACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA-ATGAAAGAAACAGCAG 451292 |||||||| | | || || |||||||| ||||| || ||||| ||||| | | ||| | Sbjct 46328 AACTTTTGTTGCCGAGGAGATTTCATCCATGGTGCTG-CTAAAGATGAAGAAGATAGCGG 46386 Query 451293 AACAATATATTGGTTCTCCAGTT-ACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 | |||| |||| || | | ||||| ||||| || || || || || |||||| Sbjct 46387 AGGCATAT-TTGGGCGGGGAGATGAGGGATGCGGTAATAACAGTACCGGCATACTTCAAT 46445 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGA 451411 ||| || || || || || | |||||||||| || || ||||||||||| | || Sbjct 46446 GATAGCCAGCGCCAGGCGACGATAGATGCAGGAAGAATAGCAGGTTTAAATGTGTTGCGC 46505 Query 451412 ATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 | | ||||| || |||||||| || | ||||| || Sbjct 46506 GTCGTCAATGAGCCCACAGCAGCCGCCATTGCATACGG 46543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975543734145200