Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 129 7e-25 seq5 104 3e-17 >seq1 Length=4220646 Score = 129 bits (142), Expect = 7e-25 Identities = 353/537 (66%), Gaps = 13/537 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||||||||||| ||||| ||| | || ||||| ||||| |||||| | || ||| | Sbjct 1713375 CCTCAGTACATGTTTATGCGCGTCTCAATAGGTATTCATGGTGAAGATGTGGACGCTGCT 1713434 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTA---TGTTCATCCACGCAACACCAACCCTC 111728 | ||||| ||| | ||||| || | ||| || ||||| |||| || || Sbjct 1713435 ATTGAGACCTACAATCTAATGTC---TGAAAAGTGGTTGATTCACGCCTCACCCACTCTT 1713491 Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 || || ||||| || || || || ||||| || ||||| | || ||| ||||| Sbjct 1713492 TTTAATGCTGGGACGCCTTACCCTCAGATGTCTAGCTGTTTTTTGCTTACAATGAAGGAC 1713551 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || ||| | || || || | ||| |||| ||||||| | ||||| || || Sbjct 1713552 GACAGTATCGAGGGTATATATGACACGCTCAAACAATGTGCACTGATCTCGAAAAACGCG 1713611 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908 ||||| ||||| | | | || || || ||| || | ||| || || Sbjct 1713612 GGTGGGATCGGTCTCAATGTTCACTGCATCCGAAGCAAGAATACGTTTATCGCTGGAACT 1713671 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 ||||| | || ||||| || | || |||||||| || || ||| ||| || || ||| Sbjct 1713672 AATGGGGAGTCCAATGGTCTTGTACCGATGCTTCGGGTCTTCAACAGCACCGCTCGTTAT 1713731 Query 111969 GTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 || | || | || | || || | | || ||||||| || |||||||| Sbjct 1713732 GTCGATCAGGGAGGCAATAAACGACCCGGTGCCTTTGCCATCTATCTCGAACCATGGCAT 1713791 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAG--GCGCGGT 112083 ||||| | || |||| | ||||| || ||| || | ||| ||| |||| | Sbjct 1713792 CCGGATGTACTGCAGTTTGTGGAGTTACGGAAGAACACTGGCGCTGAAGAGATTCGCGCT 1713851 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 || ||||||||| ||| || |||||||| ||||| ||||||||| ||||||||| Sbjct 1713852 --CGGGATCTCTTCCTCGCACTTTGGATTCCCGATCTATTCATGAAGCGAGTTGAGG 1713906 >seq5 Length=2931570 Score = 104 bits (114), Expect = 3e-17 Identities = 173/246 (70%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 || ||| | ||||| ||||| | || ||| || ||||| || ||||||||| | | | Sbjct 2233186 CTGTTTAACGCCATTCAAACGTTGCCGTGTGTTGCTAAGAAGGCCGATTGGGCTCTTAGG 2233127 Query 102150 TGGTTTG---ATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 102206 ||| ||| ||| |||| | | | | || ||||| || | || || || | || Sbjct 2233126 TGGATTGCAAATAAAAAGGCACCGTAC---GCGGAGCGTCTGGTGGCGTTCGCTGCTATT 2233070 Query 102207 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCT 102265 ||||| | ||||| |||||||| || ||| | || | |||||||||||||| ||||| Sbjct 2233069 GAGGGCGTATTCTTTTCTGGTTCATT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCT 2233011 Query 102266 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGA 102325 |||||| || ||| ||| |||||||| ||| ||| || || || |||||| || Sbjct 2233010 CATGCCTGGCCTCACCTTTAGTAACGAGCTGATCAGTCGAGATGAAGGCCTCCACACGGA 2232951 Query 102326 GTTTGC 102331 ||||| Sbjct 2232950 TTTTGC 2232945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620688860968000