Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 143 3e-29 seq5 120 4e-22 >seq1 Length=4220646 Score = 143 bits (158), Expect = 3e-29 Identities = 383/585 (65%), Gaps = 3/585 (1%) Strand=Plus/Minus Query 110606 CCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAAC 110665 ||||||| | ||||||||| || || |||||||| | || ||| || || || | Sbjct 1713906 CCTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGC 1713847 Query 110666 GAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCC 110725 || ||||||| | || ||| |||| ||||| ||| | || | ||||| |||| Sbjct 1713846 GAATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCC 1713787 Query 110726 ATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGA---CCCGCCTGGTTAACATAGC 110782 ||||||||||||||| || | || || || | || |||| | ||||| | Sbjct 1713786 ATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTATTGCCTCCCTGATCGACATAAC 1713727 Query 110783 GTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTAC 110842 | || ||| |||||||||| ||||| || | || |||| ||| | ||||| || | Sbjct 1713726 GAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTC 1713667 Query 110843 CCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCC 110902 | || | || ||| || ||| ||| | || | ||| || |||||||| Sbjct 1713666 CAGCGATAAACGTATTCTTGCTTCGGATGCAGTGAACATTGAGACCGATCCCACCCGCGT 1713607 Query 110903 ACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCT 110962 || || ||||||| | | |||| || |||| ||||| || || || ||| Sbjct 1713606 TTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCCT 1713547 Query 110963 TGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTG 111022 | | | || | ||| || |||||||||||| |||||| || ||||| || || | Sbjct 1713546 TCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAG 1713487 Query 111023 TAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGG 111082 | |||| || ||||| ||| || ||||| ||||| || || | || | | Sbjct 1713486 TGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGT 1713427 Query 111083 GTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGA 111142 ||||||| ||| |||||||| || | || ||||| ||||| || |||||| | || Sbjct 1713426 CCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTCCC 1713367 Query 111143 TTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCT 111187 | || ||||| ||| |||| || |||||||| |||| Sbjct 1713366 AAATTTTCCCATCCCTACGGAGAAGATACGACTTCTCTAACGTCT 1713322 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 109407 GCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGA 109466 ||| ||||||||||| ||||||||||| ||| |||||| ||||| | |||||| | Sbjct 1715324 GCGCAGATAATACATCCCCGTTTTGAGTCCACGCTTCCAGGCGTAGAAATGCATACTCGT 1715265 Query 109467 GAGTTTGGAAAGT-GTCGGACT-CTCCATAAACAAGTTCATCGACTGAGACTGATCGATG 109524 || ||| | || || || || || ||| ||| ||| | ||||| ||| || ||| Sbjct 1715264 GATTTT--ACCGTAGTTGGGCTCCTTCATGTACAGGTTAAGAGACTGGCTCTGGTCAATG 1715207 Query 109525 AATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584 || || |||||||||| |||| |||| || || ||| || ||||| || || Sbjct 1715206 AACGGAGCACGATCAGCTGCCAAATCGAGTATTTTTTTCTGGGGTATCTCCCAAACTGTT 1715147 Query 109585 TTGTACAAATTCTTGATATCATCGGGAAT 109613 ||||| | | ||||| || || ||||| Sbjct 1715146 TTGTAGAGAGCTTTGATGTCTTCTGGAAT 1715118 >seq5 Length=2931570 Score = 120 bits (132), Expect = 4e-22 Identities = 368/561 (66%), Gaps = 30/561 (5%) Strand=Plus/Plus Query 119498 AAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGG 119557 |||| | || || || |||||||| ||| ||| ||||| ||||| ||| || ||||| Sbjct 2232948 AAATCCGTG-TGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCCAGG 2233006 Query 119558 CATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCC 119617 |||||| || | ||||| ||||| ||||||| | ||| ||||||||||| | ||| Sbjct 2233007 CATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAATACGCC 2233066 Query 119618 CTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGT------CGAA 119671 ||| | | ||||| || | |||||||| || | ||| | ||| | | | Sbjct 2233067 CTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGT---GCCTTTTTATTTGCAAT 2233123 Query 119672 CCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTT---- 119727 |||| | |||||||| | |||||| | | || || | ||||| ||||| | Sbjct 2233124 CCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAA 2233183 Query 119728 CGAAAAGTTGC-TTCTTTTCAGCACC--ATCCTTAATATATTTATCAATGAGTTTAGAGT 119784 | ||||| || |||| ||| |||||| | || ||||||| || ||||| Sbjct 2233184 CAGAAAGTCGCGTTCT-------ACCGGATCCTTGACGTAGGTATCAATCAGAAGAGAGT 2233236 Query 119785 AGGTCTCACCATGAACCATTTCATTGTGTGAC-TGATAGGCATAAAATGAGCGAGCTTCG 119843 | | ||| ||||| |||| | | ||| || ||||||| | ||||| ||| Sbjct 2233237 ACATTTCAGAATGAATGTTTTC-TACGGCGACTTGCATTCCATAAAAACAACGAGCCTCG 2233295 Query 119844 GAAATTTGCACTTCGTCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGAT 119903 | |||||| || |||| | |||||| | | ||||||| ||| || ||||| Sbjct 2233296 GGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCACTG 2233355 Query 119904 CCAGCGAAGAATGCTAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAGTGTTTTC 119963 | |||||||| || |||| ||| ||||| | | || ||| || || ||| | Sbjct 2233356 GCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTTCC 2233415 Query 119964 CAGTCGTCCATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAGTTAGA--CATCTGTG 120021 ||||| | ||| || | || || || || ||| |||||||| ||| || | | Sbjct 2233416 CAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGAGGCAAC--CG 2233473 Query 120022 CCTTTTTATAGAGTTCCCAAA 120042 | || || |||| ||||||| Sbjct 2233474 CTTTCTTGTAGAACTCCCAAA 2233494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588925200820000