Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 105 8e-18 seq1077 89.7 6e-13 seq131 89.7 6e-13 >seq1 Length=4220646 Score = 105 bits (116), Expect = 8e-18 Identities = 409/637 (64%), Gaps = 7/637 (1%) Strand=Plus/Minus Query 106679 CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGA 106738 || |||| ||||||||| | ||| || ||| |||||||| ||| ||| | ||| Sbjct 1714009 CCTTCCGACTCGTACTTCGCGTAAAGCATTTCGAACTCCTCCCCCCAACAGTCAGCAAGA 1713950 Query 106739 CCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 106798 || || || | || | || | ||| || ||| ||||||| ||||||||| Sbjct 1713949 CCGGGGCACTCATGGGGGTCCATAAAGGTCCACGAACTACCTGCCTCAACTCGCTTCATG 1713890 Query 106799 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 106858 || || || |||||||| || | |||||||| | | ||| |||||| | || Sbjct 1713889 AATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATCTCTTCAGCGCCA 1713830 Query 106859 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 106918 ||| |||||||| | |||| || | ||||| |||||||| || ||||||| Sbjct 1713829 GTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGTTCGAGATAGATG 1713770 Query 106919 GCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAAT 106975 || | | || ||| | || | |||| ||||| || || ||| ||| || Sbjct 1713769 GCAAAGGCACCGGGTCGTTTATTGCCTCCCTGATCGACATAACGAGCGGTGCTGTTGAAG 1713710 Query 106976 ACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTA 107035 || |||||||| || | || ||||| || | ||||| || || ||| | || Sbjct 1713709 ACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCAGCGATAAACGTATTC 1713650 Query 107036 TTGGCTCTCACAT-CA-TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCG 107093 || ||| || || || || | | | || || || || || || ||||| | | Sbjct 1713649 TT-GCT-TCGGATGCAGTGAACATTGAGACCGATCCCACCCGCGTTTTTCGAGATCAGTG 1713592 Query 107094 CACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGA 107153 |||| | | || || |||| ||||| | ||| ||| ||||| | | | | | Sbjct 1713591 CACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCCTTCATTGTAAGCAAAA 1713532 Query 107154 AGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAA 107213 | || || |||||||| || || || |||||||| || || || |||| ||||||| Sbjct 1713531 AACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTGGGTGAGGCGTGAA 1713472 Query 107214 TGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGT 107273 | ||| || ||||| | ||| ||||| | ||| || | ||||| || | Sbjct 1713471 TCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGTCCACATCTTCACCAT 1713412 Query 107274 GGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 | || || || | || |||||||||||||| || || Sbjct 1713411 GAATACCTATTGAGACGCGCATAAACATGTACTGAGG 1713375 >seq1077 Length=20753 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 169362 TTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACC 169421 || || || ||||| |||||||||||| | ||||||||||| || |||||| || || Sbjct 2016 TTACCGCGAAGAGGGAAGACGCCATAGCGGTCACGTCCAACCACTCCGAGACCGGCCACG 1957 Query 169422 GCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCGCC 169481 ||||| | || || || || ||||| |||| |||||||| || | || | | Sbjct 1956 GCAAGAGACTTGGCCGAGTCTCCCTCAGTGAGGATGAGGGTGCAGTGCTGCGAGTTCCTT 1897 Query 169482 GTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGTAATTTTGG 169530 || || || | ||| || ||||||| ||| ||||| || | | ||||| Sbjct 1896 GTTCCTGCATCGTTGGCATCGTCCAGCTTTGGAATCCCCTTTAATTTGG 1848 >seq131 Length=238489 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 169362 TTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACC 169421 || || || ||||| |||||||||||| | ||||||||||| || |||||| || || Sbjct 2016 TTACCGCGAAGAGGGAAGACGCCATAGCGGTCACGTCCAACCACTCCGAGACCGGCCACG 1957 Query 169422 GCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCGCC 169481 ||||| | || || || || ||||| |||| |||||||| || | || | | Sbjct 1956 GCAAGAGACTTGGCCGAGTCTCCCTCAGTGAGGATGAGGGTGCAGTGCTGCGAGTTCCTT 1897 Query 169482 GTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGTAATTTTGG 169530 || || || | ||| || ||||||| ||| ||||| || | | ||||| Sbjct 1896 GTTCCTGCATCGTTGGCATCGTCCAGCTTTGGAATCCCCTTTAATTTGG 1848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589929914156000