Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq15 167 5e-36 seq52 147 5e-30 seq4 120 7e-22 >seq15 Length=1207391 Score = 167 bits (184), Expect = 5e-36 Identities = 171/222 (77%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | |||||| || || || ||||| ||||||||||| || |||| ||||| | | Sbjct 831629 AGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAGAGAGTCCGC 831688 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || || | ||||||||| ||||||||||| |||||||| ||||| || || || ||| Sbjct 831689 CCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCT 831748 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGG 195099 |||||||| |||||| || ||||||||||||| || |||| || || |||||| Sbjct 831749 TTGTCTTGGATTTTTGCTTTTACGTTCTCAATGGAATC---ACTTGGCTCAACCTCAAGG 831805 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || ||||| || | ||| || || || | ||||||| Sbjct 831806 GTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 831847 >seq52 Length=575441 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||| |||||||| || || || | || || | |||||||| Sbjct 526339 ACAAGGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCC 526280 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| || ||||| ||||| || |||||||| || ||||||||| Sbjct 526279 AACTGCTTCCCCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGA 526220 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| ||||| |||||| || || |||| ||||| Sbjct 526219 ATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTG 526160 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| |||||| || || | |||||| Sbjct 526159 CCGGTCAGAGTTTTCACAAAAATTTGCAT 526131 Score = 141 bits (156), Expect = 2e-28 Identities = 160/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| |||||||| ||||| || ||||| || | || || | |||||||| Sbjct 537693 ACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCC 537634 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| | |||||| |||||||| |||||||| || ||||| || Sbjct 537633 AACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 537574 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || ||| ||| ||||||||||| | ||| ||| ||||| || || || | || Sbjct 537573 ATCTTTGCCTTCACGTTCTCAATCGAGTC---ACTGGGCTCCACCTCCAGTGTGATTGTT 537517 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || | ||| || ||||| | |||||| Sbjct 537516 TTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 537484 Score = 134 bits (148), Expect = 3e-26 Identities = 160/213 (75%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCTCCCATCTTC 194990 ||||| ||||||||||| || ||||| || ||||| || | |||| || | |||||||| Sbjct 537237 ACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAG-GTGCGACCATCTTC 537179 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||| || || ||||| || ||||| || ||||| |||||||| || ||||| || Sbjct 537178 CAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTTGTCCTG 537119 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 ||| ||| ||| || ||||| || | ||| ||| ||||| || || || | || Sbjct 537118 AATCTTTGCCTTCACATTCTCTATTGAGTC---ACTGGGCTCCACCTCCAGTGTGATTGT 537062 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||||||| || ||||| | |||||| Sbjct 537061 TTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 537029 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || ||||| |||||||| |||||||| | |||||| | || ||||| Sbjct 526795 ACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCC 526736 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| ||||| || | || ||||| ||||| |||||||| || || ||||| Sbjct 526735 AACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCTTGG 526676 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||||||||| | || ||| ||| ||||| || || | ||| Sbjct 526675 ATCTTCGCCTTTACGTTCTCAATCGAATC---ACTGGGTTCAACTTCTAGCGTTATGGTC 526619 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| | ||| || || || | ||||| Sbjct 526618 TTGCCTGTTAGAGTCTTGACAAAGATCTGCAT 526587 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || ||||| |||||||| ||||| |||| |||||| | ||||| || Sbjct 526567 ACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCC 526508 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||||| || ||||| | || || |||||||| ||||||||||| || ||||| Sbjct 526507 AATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGG 526448 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||||||||| | || ||| ||||| || || | ||||| Sbjct 526447 ATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTG 526388 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || || || | ||||| Sbjct 526387 CCGGTTAGAGTCTTGACAAAAATCTGCAT 526359 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || || || || ||||| ||||| || | || || | ||||| || Sbjct 527479 ACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGATAGGGTACGACCATCCTCC 527420 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| | || || || || || ||||| || || || || ||| Sbjct 527419 AACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCCTGA 527360 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || |||||||| ||||| | ||||||||| || |||| ||||| Sbjct 527359 ATTTTGGCCTTCACATTCTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGTCTTC 527300 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | |||||| Sbjct 527299 CCAGTCAGCGTCTTCACGAATATTTGCAT 527271 Score = 127 bits (140), Expect = 5e-24 Identities = 153/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || |||||||| ||||| ||||| || | ||||| | ||||| || | ||| Sbjct 527018 GTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGATAGAGTACGACCATCCTCCAACTG 526959 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| ||||||||||| | |||||| |||||||| |||||||| || ||||| || || || Sbjct 526958 CTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATCTT 526899 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||| |||||||| || | ||| ||| ||||| || | ||| | ||||| || Sbjct 526898 CGCCTTCACGTTCTCTATAGAGTC---ACTGGGCTCCACCTCCAAGGTGATGGTCTTGCC 526842 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || | ||||| Sbjct 526841 GGTGAGGGTTTTAACAAATATCTGCAT 526815 Score = 116 bits (128), Expect = 8e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| |||||||| ||||| |||| |||||| | ||||| || Sbjct 527707 ACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCCTCC 527648 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| || || || ||||| | || || || || || || || || |||||||||||| Sbjct 527647 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGA 527588 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| | || | || || || ||||| | ||||| Sbjct 527587 ATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 527528 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || |||||||| | ||||| Sbjct 527527 CCGGTAAGCGTCTTTACGAAGATCTGCAT 527499 Score = 109 bits (120), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || || || || ||||| ||||| |||| | || | ||||| || Sbjct 518872 ACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCC 518931 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| | |||||| ||||| ||||||||||| || || || ||| Sbjct 518932 AACTGCTTGCCAGCGAAGATCAATCGTTGCTGGTCAGGAGGAATGCCCTCCTTATCATGA 518991 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| || | ||| ||| ||||| || | |||| ||| Sbjct 518992 ATCTTAGCCTTCACATTCTCTATCGAGTC---ACTCGGCTCCACCTCCAACGTAATTGTC 519048 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || || || | ||||| Sbjct 519049 TTCCCAGTTAGCGTCTTCACAAATATCTGCAT 519080 Score = 109 bits (120), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || || || || ||||| ||||| |||| | || | ||||| || Sbjct 528163 ACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCC 528104 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| | |||||| |||||||| || ||||| || || ||||| Sbjct 528103 AACTGCTTGCCAGCGAAGATCATTCGTTGCTGGTCTGGTGGTATGCCCTCCTTTTCTTGT 528044 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || ||| ||| || ||||| || | ||| ||| ||||| || | |||| ||| Sbjct 528043 ATCTTTGCCTTCACTTTCTCTATCGAGTC---ACTCGGCTCCACCTCCAACGTAATTGTC 527987 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || || || | ||||| Sbjct 527986 TTCCCAGTTAGCGTCTTCACAAATATCTGCAT 527955 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| |||||||| ||||| |||| |||||| | || || || Sbjct 519445 ACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCC 519504 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| || || || ||||| | || || || || || || || || |||||||||||| Sbjct 519505 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGA 519564 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| | || | || || || ||||| | ||||| Sbjct 519565 ATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 519624 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | |||||| Sbjct 519625 CCGGTAAGCGTCTTCACAAAGATTTGCAT 519653 >seq4 Length=3027866 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| || |||||||||||||| | | | | ||||| || Sbjct 343657 ACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCC 343716 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || || || ||||| || ||||||||||| ||||| || || ||||||||| Sbjct 343717 AATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGA 343776 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| | || || || || ||||| || | || || Sbjct 343777 ATCTTAGCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTG 343836 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||| || || | ||||| Sbjct 343837 CCGGTAAGAGTTTTCACAAAAATCTGCAT 343865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109383514892300