Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq52 132 3e-26 seq15 105 4e-18 seq4 86.0 4e-12 >seq52 Length=575441 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||| | || |||||||||| || |||||||||||||| ||||| || Sbjct 527041 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGAT 526982 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||| ||| ||||| || || || | ||||||||||||| | || Sbjct 526981 AGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 526922 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| |||||| || ||| |||| || |||| || ||| || Sbjct 526921 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATAGAGTCACTGGGCTCCACC 526862 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || ||||| || || ||||| ||||||||| Sbjct 526861 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCATA 526814 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || || || ||||| ||||| || ||| | || |||| |||| ||| Sbjct 537688 GTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAACTG 537629 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || || || || | ||||||||||||| | || | ||||||||||| ||||| Sbjct 537628 CTTGCCAGCGAAGATCAATCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTT 537569 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 || ||| | ||||| |||| || ||| || || | || || ||||| || || Sbjct 537568 TGCCTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGT 537509 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 ||||||||||| ||||||||||| Sbjct 537508 TAGAGTCTTCACGAAGATCTGCAT 537485 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || |||||||||||||| ||||| || | | || |||| || Sbjct 519217 ACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCTTCT 519276 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||| ||||| || | |||||||||||| | || | ||||||||||| Sbjct 519277 AACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGG 519336 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || || ||||||| |||| | ||| || || | || || || || Sbjct 519337 ATCTTCGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTC 519396 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||||||||| || ||||| Sbjct 519397 CCAGTCAGCGTCTTCACAAATATTTGCAT 519425 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||| | || |||||||||| || || ||||||||||| ||||| || Sbjct 527269 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 527210 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || |||| |||| ||| ||||| ||||| || | |||||||||||| | || Sbjct 527209 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 527150 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||| || |||||| || ||| ||||||| |||| | ||| || Sbjct 527149 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 527090 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || || || || || || || ||||||||||| || ||||| Sbjct 527089 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCAT 527043 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || |||||||||||||| ||||| || | | || |||| || Sbjct 527935 ACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGACAACGTGCGACCATCTTCT 527876 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||| ||||| || | |||||||||||| | || | |||||||| || Sbjct 527875 AACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGG 527816 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| ||||||| |||| | ||| || || | || || || || Sbjct 527815 ATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTC 527756 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||||||||| || ||||| Sbjct 527755 CCAGTCAGCGTCTTCACAAATATTTGCAT 527727 Score = 105 bits (116), Expect = 4e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 |||| |||| ||| ||| || || ||||| ||||| || | | | || |||| |||| Sbjct 537236 CAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTCCA 537177 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 ||| ||||| ||||| || || |||||||| ||| | || | ||||||||||| || Sbjct 537176 ACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAA 537117 Query 34894 TCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 |||| || || |||| || |||| || ||| || || | || || ||||| | Sbjct 537116 TCTTTGCCTTCACATTCTCTATTGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGC 537057 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||||||||| ||||| ||||| Sbjct 537056 CAGTCAAAGTCTTCACGAAGATTTGCAT 537029 Score = 102 bits (112), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| ||||| ||||| | || |||| |||| |||||| || ||||| Sbjct 527689 TCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCCTCCAACTGTTTGCCAGCAAAG 527630 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||| || | || | ||||| ||||| |||||| || || || Sbjct 527629 ATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCAC--AT 527572 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || ||||| |||| | |||||| |||| ||| || || || || || || ||||| | Sbjct 527571 TCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTTA 527512 Query 34969 CAAAGATCTGCATA 34982 | |||||||||||| Sbjct 527511 CGAAGATCTGCATA 527498 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| ||||| ||||| | || | || |||| |||||| || ||||| Sbjct 519463 TCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAG 519522 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||| || | || | ||||| ||||| |||||| || || || Sbjct 519523 ATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCAC--AT 519580 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || ||||| |||| | |||||| |||| ||| || || || || || || ||||||| Sbjct 519581 TCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCA 519640 Query 34969 CAAAGATCTGCAT 34981 ||||||| ||||| Sbjct 519641 CAAAGATTTGCAT 519653 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||||||||| || ||| | || |||| |||| ||| || || ||||| Sbjct 526321 TCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAAG 526262 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||| ||||||||||| | || | ||||||||||| ||||||| || || || Sbjct 526261 ATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCAC--AT 526204 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | || || || || | || || || || || || ||||| |||| Sbjct 526203 TCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTCAGAGTTTTCA 526144 Query 34969 CAAAGATCTGCAT 34981 |||| || ||||| Sbjct 526143 CAAAAATTTGCAT 526131 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| || | | || |||| |||| ||| || || || || Sbjct 518889 TTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCCAACTGCTTGCCAGCGAA 518948 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | |||||||||||| | || | |||||||| || |||||| || || Sbjct 518949 GATCAATCGTTGCTGGTCAGGAGGAATGCCCTCCTTATCATGAATCTTAGCCTTCACATT 519008 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||||| |||| | ||| || || | || || || || || || || |||||||| Sbjct 519009 CTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCAC 519068 Query 34970 AAAGATCTGCATA 34982 ||| ||||||||| Sbjct 519069 AAATATCTGCATA 519081 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| || | | || |||| |||| ||| || || || || Sbjct 528146 TTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCCAACTGCTTGCCAGCGAA 528087 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | ||||||||||||| | || | |||||||| || ||||| || || Sbjct 528086 GATCATTCGTTGCTGGTCTGGTGGTATGCCCTCCTTTTCTTGTATCTTTGCCTTCACTTT 528027 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||||| |||| | ||| || || | || || || || || || || |||||||| Sbjct 528026 CTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCAC 527967 Query 34970 AAAGATCTGCATA 34982 ||| ||||||||| Sbjct 527966 AAATATCTGCATA 527954 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| || || ||||| | || | || |||| ||| || || || || Sbjct 526777 TCCTTTTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAA 526718 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || || ||| | || | |||||||| || |||||| || ||| Sbjct 526717 ATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTC 526658 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| |||| || ||||| || | |||||||| || || || |||||||| ||| Sbjct 526657 TCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTCTTGCCTGTTAGAGTCTTGACA 526598 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 526597 AAGATCTGCAT 526587 >seq15 Length=1207391 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || ||||| |||||||| || || | || | || |||| ||| || ||||| || Sbjct 831656 TCCTTTTGAATATTATAGTCGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAG 831715 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| || ||| | || | ||||| ||||| || || ||| ||| Sbjct 831716 ATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTC 831775 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || || |||| | |||||| || | ||||||||||||||| ||||||||||| ||| Sbjct 831776 TCAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACA 831835 Query 34971 AAGATCTGCAT 34981 || || ||||| Sbjct 831836 AAAATTTGCAT 831846 >seq4 Length=3027866 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||| || || || || | | ||| |||| |||| || || || ||||| Sbjct 343675 TCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAA 343734 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || |||||| | || | |||||||||||| |||||| || || || Sbjct 343735 ATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTAGCCTTCAC--AT 343792 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || || || || ||| || || | || || ||||| || || ||||| |||| Sbjct 343793 TCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCA 343852 Query 34969 CAAAGATCTGCAT 34981 |||| |||||||| Sbjct 343853 CAAAAATCTGCAT 343865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324606300343200