Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 239 5e-58 seq1 174 2e-38 >seq5 Length=2931570 Score = 239 bits (264), Expect = 5e-58 Identities = 492/726 (68%), Gaps = 18/726 (2%) Strand=Plus/Plus Query 18831 ACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATT 18890 ||||||||| || || | | ||||| || || |||||||||||||| ||| ||| | Sbjct 2232812 ACAATTCATGCCAATAAGATCGACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 2232871 Query 18891 TACTGCCTC-----TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGA 18945 || ||||| |||| | ||| ||| || || | |||| || | || | Sbjct 2232872 GACCGCCTCCCTCATGATGTCATA-----AACCCTTTCCGCCGTAGGCTTGTTGACAATA 2232926 Query 18946 TGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCA 19005 |||||||| || | ||||||||||| || || || || |||| ||| |||| || Sbjct 2232927 TGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCG 2232986 Query 19006 TTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAAT 19065 ||| ||| || | |||||||| || || | || || | |||||| || ||||||||| Sbjct 2232987 TTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAAT 2233046 Query 19066 GATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA 19125 || ||||||||||||| || || | || || || || || || | || | || Sbjct 2233047 GAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGT 2233106 Query 19126 GCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATT 19185 || | ||||| |||||| | || |||||||| |||||||| ||||| |||| Sbjct 2233107 GCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAAC 2233166 Query 19186 GTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATC 19245 || | || | ||||| ||| | || || | | ||| || || || | ||| ||| Sbjct 2233167 GTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTACCGGATCCTTGACGTAGGTATCAATC 2233226 Query 19246 AATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACAT 19305 | | | ||||||||| |||||||| ||||||| || | || | ||| |||||||| Sbjct 2233227 AGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAA 2233286 Query 19306 CTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGA--CCAAATTTTCATTAACTA 19363 | || || | || || || || ||||||| ||| | | |||||||||||| | Sbjct 2233287 CGAGCCTCGGGAATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGA 2233344 Query 19364 TTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATC-TGAG 19422 | |||||||| || || || || || || |||| ||| || || || | | | Sbjct 2233345 TGCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCA- 2233403 Query 19423 GTTAA-TGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAA 19481 |||| | | ||| ||| | | ||| || | |||||| ||||| ||||||||||| || Sbjct 2233404 -TTAAGACTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAA 2233462 Query 19482 AGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAAC 19541 ||| || | ||||| || || | | ||| |||||| | ||||| || || | | ||| Sbjct 2233463 AGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAAC 2233522 Query 19542 AAATCT 19547 ||||| Sbjct 2233523 GAATCT 2233528 >seq1 Length=4220646 Score = 174 bits (192), Expect = 2e-38 Identities = 364/538 (68%), Gaps = 6/538 (1%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 |||| |||| ||| || |||||||| || | || | ||||| || | | |||||| Sbjct 1713894 TCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATCTCTTCAG 1713835 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 |||| | ||| | | || | ||| | || || ||| | |||||||||||| | || Sbjct 1713834 CGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGTTCGAGAT 1713775 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | || || | |||| ||||||||||| ||||| ||||| | ||| | || || ||| Sbjct 1713774 AGATGGCAAAGGCACCGGGTCGTTTATTGCCTCCCTGATCGACATAACGAGCGGTGCTGT 1713715 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 | | || | | ||| || |||| |||||| || ||||| ||||| | ||| ||| Sbjct 1713714 TGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCAGCGATA-AAC 1713656 Query 48451 TTCCACTAGC-TCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATA 48507 | || || || || | | |||| | ||| || ||||| || |||| || | Sbjct 1713655 GTATTCTTGCTTCGGATGCAGTGAACATTG--AGACCGATCCCACCCGCGTTTTTCGAGA 1713598 Query 48508 TTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTA 48567 | || ||||| |||| || || ||||| || || || ||||| || || |||| | | Sbjct 1713597 TCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCCTTCATTGTAA 1713538 Query 48568 ATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATG 48627 | |||||| |||||||| || || | | || || | |||||| | || || || | Sbjct 1713537 GCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTGGGTGAGG 1713478 Query 48628 CATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCC 48687 | ||||| ||||| || || || | | || || || |||||| ||| || | ||| Sbjct 1713477 CGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGTCCACATCTT 1713418 Query 48688 ATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTT 48745 ||| |||||||| || || ||||| ||||| || ||||| || || |||||| Sbjct 1713417 CACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTCCCAAATTTT 1713360 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 46980 ACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTCTTT 47039 ||||| ||||| || |||| || | | || || | ||||||||| || || || Sbjct 1715359 ACAGTGAACTTGATGGGATCGGCAGCAGGCCTAGTGCGCAGATAATACATCCCCGTTTTG 1715300 Query 47040 AAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAA 47099 | || |||| | |||||||||||||| || | |||| || | || || Sbjct 1715299 AGTCCACGCTTCCAGGCGTAGAAATGCATACTCGTGATTTTACCGTAGTTGGGCTCCTTC 1715240 Query 47100 ATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCT 47159 || | | |||||||| || ||||| ||||| || | | | | ||||||||||| ||| Sbjct 1715239 ATGTACAGGTTAAGAGACTGGCTCTGGTCAATGAACGGAGCACGATCAGCTGCCAAATCG 1715180 Query 47160 AAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||||||||| |||||||| || | ||| ||||||||||| Sbjct 1715179 AGTATTTTTTTCTGGGGTATCTCCCAAACTGTTTTGTAGAGAGCTTTGATGTCTTCTGG 1715121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562060318116000