Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq5 176 5e-39 >seq5 Length=2931570 Score = 176 bits (194), Expect = 5e-39 Identities = 364/540 (67%), Gaps = 4/540 (1%) Strand=Plus/Plus Query 37160 ATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTC 37219 || |||||| | | ||||||||||| || | |||||||||| ||| |||| || Sbjct 2232926 ATGTTTAAAAATGAGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTC 2232985 Query 37220 ATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAA 37279 ||| |||||| | || ||||| | ||| | || || | ||| || || | ||||| Sbjct 2232986 GTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAA 2233045 Query 37280 AGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGT 37339 || ||||||||||| | || |||| || || || || || ||||| || | | Sbjct 2233046 TGAACCAGAAAAGAATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGG 2233105 Query 37340 TGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAAT 37399 || | | || | |||||| | | |||||| ||||| |||||| | Sbjct 2233106 TGCCTTTTTATTTGCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAA 2233165 Query 37400 TGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAAT 37459 |||| ||| || || || ||||||| |||| | ||| | | || |||||||| Sbjct 2233166 CGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCTACCGGATCCTTGACGTAGGTATCAAT 2233225 Query 37460 TAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACA 37519 || | | ||||||||||| ||||| ||||| | || | || | ||||||||||| Sbjct 2233226 CAGAAGAGAGTACATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACA 2233285 Query 37520 CCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTAT 37579 | ||| || | | ||| || |||||| |||| || || || ||||||||||| || Sbjct 2233286 ACGAGCCTCGGGAATTTGGACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGAT 2233345 Query 37580 CCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT--TT 37637 |||||||| || || |||||||| | ||||| || || || | || ||| || Sbjct 2233346 GCCATCACTGGCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATT 2233405 Query 37638 GATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAA 37697 | | ||| ||| ||| | | ||| || | |||||||||||| ||||| ||||| ||| Sbjct 2233406 AAGA--CTTTCCCAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAA 2233463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592265712676000