Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq52 140 3e-28 seq4 134 1e-26 >seq52 Length=575441 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 |||| || | |||||| || || || ||||| || ||||| |||| | ||| | | || Sbjct 526573 CGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCA 526514 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||||||||||||| ||||| ||||||||||| || || || ||||||||||| ||| Sbjct 526513 TCCTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTA 526454 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||| || || ||||| | || | | || | ||| ||||| || || | Sbjct 526453 TCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATG 526394 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||||||||| ||| || ||||| |||||||| Sbjct 526393 GTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 526359 Score = 127 bits (140), Expect = 2e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || || || ||||| || |||||||| | | ||| | | || ||||| || Sbjct 526790 ATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAACTG 526731 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || ||||||||||||||||| || |||||||| || |||||||| || || Sbjct 526730 CTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCTTGGATCTT 526671 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||||| | || | | ||| | ||| ||||| || || | || ||||| || Sbjct 526670 CGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTTATGGTCTTGCCTGT 526611 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 || ||| || ||||| ||||||||| Sbjct 526610 TAGAGTCTTGACAAAGATCTGCATG 526586 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| ||||| || || || ||||| || | | || | |||| ||||| ||| Sbjct 527473 TGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGATAGGGTACGACCATCCTCCAACTGC 527414 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||||||||| ||||| |||||||| || || ||||| |||||||| Sbjct 527413 TTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCCTGAATTTTG 527354 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| | ||||||||| || || | || || || || Sbjct 527353 GCCTTCACATTCTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGTCTTCCCAGTC 527294 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || ||||| |||||| Sbjct 527293 AGCGTCTTCACGAATATTTGCATG 527270 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| | || || ||||| || || ||||| || || ||||| || | | ||| | Sbjct 527032 AAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGATAGAGTACGA 526973 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| ||||| ||||| ||||| || ||||| || || || || || |||||||| || Sbjct 526972 CCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCC 526913 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 || || || || || || || | |||| || |||| | ||||| || | ||| Sbjct 526912 TTGTCCTGGATCTTCGCCTTCACGTTCTCTATAGAGTCACTGGGCTCCACCTCCAAGGTG 526853 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || |||||||| | ||||| |||||||||||||| Sbjct 526852 ATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 526815 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| ||||| || || || ||||| |||| | || | |||| ||||| ||| Sbjct 518878 TGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCCAACTGC 518937 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||| || || || || || |||||||| || ||||| ||||| || Sbjct 518938 TTGCCAGCGAAGATCAATCGTTGCTGGTCAGGAGGAATGCCCTCCTTATCATGAATCTTA 518997 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | |||| | |||| || ||||| || | || | || || || ||| Sbjct 518998 GCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTT 519057 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || |||||||||||||| Sbjct 519058 AGCGTCTTCACAAATATCTGCAT 519080 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || || ||||| || ||||| || | | || | | |||| ||||| ||| Sbjct 537687 TGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAACTGC 537628 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||| || || || || || |||||||| || || || || || ||| Sbjct 537627 TTGCCAGCGAAGATCAATCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTT 537568 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | | |||| | ||||| || || |||| |||||||||||| Sbjct 537567 GCCTTCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTT 537508 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || || || |||||||| Sbjct 537507 AGAGTCTTCACGAAGATCTGCAT 537485 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| ||||| || || || ||||| || ||||| |||| | ||| | |||| ||| Sbjct 527707 ACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCCTCC 527648 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || || || || ||||| ||||||||||| ||||| || || || || ||||| |||||| Sbjct 527647 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGA 527588 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | | ||| | || || || || |||| || || Sbjct 527587 ATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 527528 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || ||||| || |||||||| Sbjct 527527 CCGGTAAGCGTCTTTACGAAGATCTGCAT 527499 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| ||||| || || || ||||| || ||||| |||| | ||| | | || ||| Sbjct 519445 ACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCC 519504 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || || || || ||||| ||||||||||| ||||| || || || || ||||| |||||| Sbjct 519505 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGA 519564 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | | ||| | || || || || |||| || || Sbjct 519565 ATCTTGGCCTTCACATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 519624 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| | || || ||||| || |||||| Sbjct 519625 CCGGTAAGCGTCTTCACAAAGATTTGCATG 519654 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| ||||| || || || ||||| |||| | || | |||| ||||| ||| Sbjct 528157 TGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCCAACTGC 528098 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| || || || || || || ||||| || || ||||| || ||| Sbjct 528097 TTGCCAGCGAAGATCATTCGTTGCTGGTCTGGTGGTATGCCCTCCTTTTCTTGTATCTTT 528038 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | |||| | |||| || ||||| || | || | || || || ||| Sbjct 528037 GCCTTCACTTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTT 527978 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || |||||||||||||| Sbjct 527977 AGCGTCTTCACAAATATCTGCAT 527955 >seq4 Length=3027866 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || || || || ||||||||||| | | | | |||| ||||||||| Sbjct 343663 TGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGC 343722 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | ||||||||| || || ||||| || || || |||||||| || Sbjct 343723 TTGCCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTA 343782 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || || || | || || |||||||||| ||||||||||| Sbjct 343783 GCCTTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTA 343842 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | |||||| ||||| ||||||||| Sbjct 343843 AGAGTTTTCACAAAAATCTGCATG 343866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396245075463300