Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq52 120 2e-22 seq4 113 3e-20 seq15 98.7 8e-16 >seq52 Length=575441 Score = 120 bits (132), Expect = 2e-22 Identities = 161/220 (73%), Gaps = 12/220 (5%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| |||||||| || || ||||| || | ||| | || ||||||||||| || ||||| Sbjct 526322 CTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAA 526263 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || || || || |||| |||| |||||||||||| |||||| || ||| Sbjct 526262 GATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACA-T 526204 Query 48695 ACCCACAGACTCTGACGC----CTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTT 48750 | || | | || ||| |||||||||| |||||| || || || |||| ||||| Sbjct 526203 TCTCA---ATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTCAGAGTTT 526147 Query 48751 TTACAAAAATCTGCATCGTGTGTACGTGTATGTCGAGCGC 48790 | |||||||| ||||||||| ||||||| || ||||| Sbjct 526146 TCACAAAAATTTGCATCGTG---ACGTGTA-ATCAAGCGC 526111 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| |||||| || ||||| |||||| ||||| ||||| ||||||||| | ||| | Sbjct 527029 CGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGATAGAGTACGACCA 526970 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||||||||| || || || |||| ||| || || || | |||| |||||||||| Sbjct 526969 TCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTG 526910 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| || || | | ||| || | ||||||||||| || || Sbjct 526909 TCCTGGATCTTCGCCTTCACGTTCTCTATAGAGTCACTGGGCTCCACCTCCAAGGTGATG 526850 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || | ||||| ||||| |||||||| Sbjct 526849 GTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 526815 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || ||| || ||||| || ||||| ||||| | | ||| Sbjct 537246 AGACGGAGCACAAGATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGA 537187 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| ||||| || || ||||| | |||| ||||||| Sbjct 537186 CCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGATCTGGTGGAATGCCCTCC 537127 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | | || || | ||||||||||| || Sbjct 537126 TTGTCCTGAATCTTTGCCTTCACATTCTCTATTGAGTCACTGGGCTCCACCTCCAGTGTG 537067 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || |||||||| || || || || |||||| Sbjct 537066 ATTGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCATC 537028 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| ||||| ||| |||||||| ||||||||||| ||| | ||| Sbjct 526804 AGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAAAGAGTGCGA 526745 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||||||||||||| || || |||| ||||||||||| | |||| ||||||| Sbjct 526744 CCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGGAATGCCCTCC 526685 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| ||||| | | || || | || || || | ||| Sbjct 526684 TTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACTTCTAGCGTT 526625 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| || ||||| |||||||| Sbjct 526624 ATGGTCTTGCCTGTTAGAGTCTTGACAAAGATCTGCAT 526587 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || ||||| |||||| ||||| ||||| || || | | ||| Sbjct 519208 AGTCGAAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGACAACGTGCGA 519267 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || |||||||| || ||||| |||| ||| || || |||| || | ||||||| Sbjct 519268 CCATCTTCTAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCC 519327 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || || || ||||||||||| |||| Sbjct 519328 TTGTCCTGGATCTTCGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTA 519387 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || ||||| || ||||| Sbjct 519388 ATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCAT 519425 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| |||||| || ||||| ||| || ||||| ||||| || || | | ||| | Sbjct 527257 CGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAACGTGCGACCA 527198 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||||||||| || ||||| |||| ||| || || |||| || | ||||||||| Sbjct 527197 TCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTA 527138 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| || || | | || || || ||||||||||| |||||| Sbjct 527137 TCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATT 527078 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||| || || ||||| || ||||| Sbjct 527077 GTCTTCCCAGTCAGCGTCTTCACAAATATTTGCAT 527043 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| ||||| || ||||| |||||||| | || | || ||||||||| Sbjct 537687 TGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAACTGC 537628 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || |||| ||| || || || | ||||| |||||||||||| |||||| Sbjct 537627 TTGCCAGCGAAGATCAATCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTT 537568 Query 48684 TGTTTTACAGAACCCA---CAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCC 48740 || || | | || || | ||| | ||||||||||| || || ||||| || Sbjct 537567 GCCTTCAC-GTTCTCAATCGAGTCACTG--GGCTCCACCTCCAGTGTGATTGTTTTGCCG 537511 Query 48741 GTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||| || || || |||||||| Sbjct 537510 GTTAGAGTCTTCACGAAGATCTGCAT 537485 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || ||||| |||||| ||||| ||||| || || | | ||| Sbjct 527944 AGTCGAAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGACAACGTGCGA 527885 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || |||||||| || ||||| |||| ||| || || |||| || | ||||||| Sbjct 527884 CCATCTTCTAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCC 527825 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || || | | || || || ||||||||||| |||| Sbjct 527824 TTATCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTA 527765 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || ||||| || ||||| Sbjct 527764 ATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCAT 527727 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| ||||| || || | | ||| | || ||||||||||| || || || Sbjct 518890 TCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCCAACTGCTTGCCAGCGAAG 518949 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| ||| || || || | |||| ||||||||| || |||||| || ||| Sbjct 518950 ATCAATCGTTGCTGGTCAGGAGGAATGCCCTCCTTATCATGAATCTTAGCCTTCACATTC 519009 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || ||||||||||| |||||| || || || || | || || ||| Sbjct 519010 TCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCACA 519069 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 519070 AATATCTGCAT 519080 >seq4 Length=3027866 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||||||||||||||||| || | || ||||| ||||| || ||||| Sbjct 343674 CTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAA 343733 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || |||||||| || | |||| ||||||||||| |||||| || ||| Sbjct 343734 AATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTAGCCTTCACATT 343793 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | ||| || || | ||| ||||| | || || ||||| || || | |||||| || Sbjct 343794 CTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCAC 343853 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 343854 AAAAATCTGCAT 343865 >seq15 Length=1207391 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||||||||| || || || ||| | || |||| ||||||||||||||||| || Sbjct 831655 CTCCTTTTGAATATTATAGTCGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAA 831714 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || || |||||||| | || | ||||| ||||| || ||| |||||| Sbjct 831715 GATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTT 831774 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || | ||| ||||| | || || |||||||| || | ||| || || Sbjct 831775 CTCAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAAC 831834 Query 48755 AAAAATCTGCAT 48766 |||||| ||||| Sbjct 831835 AAAAATTTGCAT 831846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380905565528700