Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5 113 7e-20 seq15 100 4e-16 seq52 86.0 9e-12 >seq5 Length=2931570 Score = 113 bits (124), Expect = 7e-20 Identities = 347/530 (65%), Gaps = 12/530 (2%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || |||||||| ||||| | |||||||||| || | ||||||||||| || | Sbjct 2232942 CATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGG 2233001 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | ||| | || || ||||| || || || || || || |||||||||| Sbjct 2233002 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAGAAT 2233061 Query 18278 ATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAAC-TG--TATTTATTGCT 18333 | ||||||| ||| |||||||| | | | || || | || | |||||| Sbjct 2233062 ACGCCCTCAATAGCA-GCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTTTATTTG- 2233119 Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 || ||||| | | ||||| || | | | |||||| | | | || || Sbjct 2233120 CA--ATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGC 2233177 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||||||| | || |||| | ||| || | || || || || | | ||| || Sbjct 2233178 GTTAAACAGAAAGTCGCGTTCTACCGGATCCTTGACGTAGGTATCAATCAGAAGAGAGTA 2233237 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 |||||||||||| ||| |||| | || | || | | |||||| | | ||||||||| Sbjct 2233238 CATTTCAGAATGAATGTTTTCTACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGG 2233297 Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTA--CCAAATTCTCATTAACTATACCGTCAGCA 18571 | ||| | |||| || |||| ||| | | ||| |||||||| || || ||| Sbjct 2233298 AATTTGGACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATGCCATCACTG 2233355 Query 18572 GATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC 18631 | ||||| || ||||| ||||| |||||| || || ||| || ||| | | | Sbjct 2233356 GCCGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGCTCGCCATCATTAAGACTTTCC 2233415 Query 18632 CATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGA 18681 || ||| | ||| || | || ||||||||| || |||||| ||||| Sbjct 2233416 CAGTCAGTGAGATCCTTCGCTAAATCAACTTCCTCAACTGTCCAGAAAGA 2233465 >seq15 Length=1207391 Score = 100 bits (110), Expect = 4e-16 Identities = 166/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||||||||| || || | || || || Sbjct 831847 AATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAG 831788 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||||| ||| ||||| ||||| ||||| || ||||| ||||| || Sbjct 831787 TGATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCA 831728 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | | || | |||||||||||| | || || | ||| | || || ||||| Sbjct 831727 ACAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGACTATAA 831668 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAAT 156057 ||| || ||| ||| |||| || ||| | || ||||| || |||| || | |||| Sbjct 831667 TAT-TCAAAAGGAGTCGACACTCCATCTTGTTCTAAGACTACGAGGAGGCATGAAAT 831612 >seq52 Length=575441 Score = 86.0 bits (94), Expect = 9e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || ||||||| || || ||||| || || || || | Sbjct 527727 ATGCAAATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 527786 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || || |||||||| || || || ||||| || ||||| || || || || Sbjct 527787 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGACCAG 527846 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||| | ||| || |||||| | |||||| | || || || || || || Sbjct 527847 CAACGATTGATCTTTGCAGGAAAGCAGTTAGAAGATGGTCGCACGTTGTCCGACTACAAC 527906 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| |||||||||| || ||| Sbjct 527907 ATTCAGAAAGAGTCGACGCTTCACTTGGTG 527936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731808876040000