Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4 116 7e-21 seq52 113 9e-20 seq15 102 2e-16 >seq4 Length=3027866 Score = 116 bits (128), Expect = 7e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||||||||| | ||| |||| |||||||| || |||||||| || | | | Sbjct 343684 ATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGC 343743 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||| || ||||| || || || || ||||| || ||| || ||||| |||||| Sbjct 343744 TGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATAGAA 343803 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | || || || ||||| || ||||| || || | ||||| | ||| |||||| Sbjct 343804 TCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGC 343863 Query 192535 AT 192536 || Sbjct 343864 AT 343865 >seq52 Length=575441 Score = 113 bits (124), Expect = 9e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | ||| |||| || | ||| | || | ||| ||| || || || || || Sbjct 526588 ATGCCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGA-ATGTTGTAGTC 526530 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || |||| |||||||| |||||||||||||| || | ||| || || || Sbjct 526529 GGAAAGAGTGCGGCCATCCTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGG 526470 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || ||||| |||||||| || || ||||| || || ||||| | ||| Sbjct 526469 TGGAATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTC 526410 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || ||||| || || |||| || || | ||| |||||||| Sbjct 526409 AACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 526359 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || || || ||||| || |||| ||||| || || ||||| ||||| |||| Sbjct 518899 ATGTTGTAGTCGGACAATGTGCGACCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGT 518958 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || ||||| || || || || ||||| || || ||| || ||||| ||| || Sbjct 518959 TGCTGGTCAGGAGGAATGCCCTCCTTATCATGAATCTTAGCCTTCACATTCTCTATCGAG 519018 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || || || | ||||| || || ||||||| || || | |||||||||| Sbjct 519019 TCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCACAAATATCTGC 519078 Query 192535 AT 192536 || Sbjct 519079 AT 519080 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || || || ||||| || |||| ||||| || || ||||| ||||| | || Sbjct 528136 ATGTTGTAGTCGGACAATGTGCGACCATCCTCCAACTGCTTGCCAGCGAAGATCATTCGT 528077 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || |||||||| || || || |||||||| || || || || ||| || Sbjct 528076 TGCTGGTCTGGTGGTATGCCCTCCTTTTCTTGTATCTTTGCCTTCACTTTCTCTATCGAG 528017 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || || || | ||||| || || ||||||| || || | |||||||||| Sbjct 528016 TCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCACAAATATCTGC 527957 Query 192535 AT 192536 || Sbjct 527956 AT 527955 >seq15 Length=1207391 Score = 102 bits (112), Expect = 2e-16 Identities = 138/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || |||||||| || || | || || | || ||||| || ||||| || |||| Sbjct 831658 CTTTTGA-ATATTATAGTCGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCGAAGA 831716 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | | |||||||| ||||||||||| ||||| ||||| ||||| |||||| || Sbjct 831717 TAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCT 831776 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || ||||| | || || || || || |||||||| ||||| | || |||| || Sbjct 831777 CAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAA 831836 Query 192527 ATATCTGCATT 192537 | || |||||| Sbjct 831837 AAATTTGCATT 831847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984392965815000