Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 109 2e-18 seq55 86.0 2e-11 >seq1 Length=4220646 Score = 109 bits (120), Expect = 2e-18 Identities = 151/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 303607 TCAGTCTCTGATTCTTCATCTTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCA 303666 |||| || || ||| || ||| || | ||| | |||||| |||||||||||||||||| Sbjct 767106 TCAGCCTTTGTTTCGACAGATTGAGGTAAATGAAGATTCATTTCATCACCGTCAAAATCA 767047 Query 303667 GCATTATACGGCTTTGTGTCCGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACA 303726 || || ||||| ||| | | | |||| || || || | ||| || || || Sbjct 767046 GCGTTGTACGGTGAAGTGACAGACAAATTCAGACGAAATGT-TGACCATGG--CAAGACG 766990 Query 303727 CGGGCTTTATGACACATCATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCACG 303786 || || | |||||||||||||||||| ||||||| || |||||||||||||||| || Sbjct 766989 CGCACTCTGTGACACATCATAGACATTTTGTGTAGGGTGGGCTGACGATTGAAAACAACA 766930 Query 303787 GGGTCACCGTTTAATACATGACGATGAAC 303815 |||| |||| | | ||| || | ||| Sbjct 766929 AAGTCATCGTTCAGCATATGGCGCTCAAC 766901 Score = 102 bits (112), Expect = 2e-16 Identities = 195/285 (68%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 302562 AATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGT 302621 || ||| ||| |||||| ||| || | ||||||||| || ||||| ||| | ||| Sbjct 768184 AACCATTATGGATTCCATGGCCTTCATCAGACGACGCTGGATGTAACCGGTTTCGGCTGT 768125 Query 302622 TTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTC 302681 || || ||||||||||| | ||| ||||||||||||| || |||||||| | ||| Sbjct 768124 CTTAACGGCTGTATCAATCAAACCCTCACGACCACCCATTGCGTGGAAGAAAAACTCGGT 768065 Query 302682 CGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTC 302741 ||| || || | | ||||| |||||||||| || | | |||||| | ||| Sbjct 768064 TGGTGTAAGACCGGCTAGGTAGGAGTTCTCAACGAAGCCTCTTGACTCGGGACCGTAGTC 768005 Query 302742 GAACTTG-GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCAT 302800 | |||| | || || || || || | || | | ||| |||| | || || || | Sbjct 768004 G-TCTTGAATGAAATGGGGAAGAGTACGGTGCCTGAAACCGAATGGCACGCGTTTACCCT 767946 Query 302801 CAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTA 302845 |||| |||||||| || | || | || | ||| || || |||| Sbjct 767945 CAACATTCTGCTGCCCGACACAGGCGATTACCTGAGAGATGTTTA 767901 >seq55 Length=547705 Score = 86.0 bits (94), Expect = 2e-11 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||||||| | ||| ||| ||||| |||||||||||||| || | |||||||||||| Sbjct 146706 TGCACCGTGGGCGATCTGACAGTCACGTTCCATTTCACCGAACCGTAAACCACCATCGCG 146647 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 | | ||||| |||||||| ||||| | | || || ||||| || Sbjct 146646 ACTGCGGCCCTCCATGGGCTGACGGTTGAGAATTTGAACGGGTCCACGCGAGCGCGAGTG 146587 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||| || | ||||||||||| | |||||||||| | | ||||| | |||||| Sbjct 146586 GATCTTGTCGTCGACCATATGCTTCAAACGCTGGTAGTACGTAGGACCCAGGAAGAT 146530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471687482125300