Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq52 145 7e-30 seq15 123 2e-23 >seq52 Length=575441 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||| || ||| | ||||| || ||||| || || |||||||| || || ||| || Sbjct 526128 ACGATGCAAATTTTTGTGAAAACTCTGACCGGCAAGACAATTACGCTGGAGGTGGAACCC 526187 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||||| | || | || || ||||| |||||||| || || || || || || Sbjct 526188 AGCGACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGAC 526247 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || |||||| | |||||||| ||||| ||| |||| ||| | | | |||| || ||| Sbjct 526248 CAGCAACGTCTAATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTAT 526307 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || || ||| | ||| | ||| | || || || Sbjct 526308 AACATTCAAAAGGAGTCAACCCTCCACCTTGTGCTCCGACTTCGTGGTGG 526357 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || |||||||| || || || ||||| ||||| ||| ||| Sbjct 526358 GATGCAGATTTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAG 526417 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | ||||| ||||||||||| || ||||| || || || || || Sbjct 526418 CGATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAAGGCATTCCACCAGACCA 526477 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || |||||||||||||| || || || |||||||| | | | || || || || Sbjct 526478 GCAGCGTTTGATCTTTGCTGGTAAGCAATTGGAGGATGGCCGCACTCTTTCCGACTACAA 526537 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||||||| || || || || | ||| | ||| | || || ||| Sbjct 526538 CATTCAAAAGGAGTCAACGCTTCATCTTGTGCTACGACTTCGTGGTGGC 526586 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || ||||| || || || ||||||||||| ||||| ||| | | | Sbjct 527271 ATGCAAATATTCGTGAAGACGCTGACTGGGAAGACTATTACGCTGGAAGTGGAACCTAGC 527330 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || || || || || || || || || || || ||||| Sbjct 527331 GACACAATTGAGAATGTGAAGGCCAAAATTCAGGATAAGGAGGGTATTCCGCCTGATCAG 527390 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| || || || ||| |||||||| | | | | ||||| || ||| Sbjct 527391 CAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCAGACTACAAC 527450 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||||||||| || ||| | ||| | || |||| || || Sbjct 527451 ATTCAGAAGGAATCGACCCTTCACCTTGTGCTTCGTCTGCGTGGTGG 527497 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || ||||| || || || || |||||| | || || || | | Sbjct 527043 ATGCAAATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 527102 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||| | || || |||||||| || || || || || || || || || Sbjct 527103 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGACCAG 527162 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || || ||| |||||||| | | |||| || || ||| Sbjct 527163 CAACGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAAC 527222 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||||||||| |||| ||||| || ||| Sbjct 527223 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 527270 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || ||||| || ||||| || || | | Sbjct 527499 ATGCAGATCTTCGTAAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 527558 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || || ||||| ||||||||||| || || || || ||||| Sbjct 527559 GATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCAG 527618 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || |||||| |||||||| | | | || || || ||| Sbjct 527619 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGATGGTCGCACTCTTTCCGACTACAAC 527678 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||||||| || || || ||| | ||| | || |||| || ||| Sbjct 527679 ATTCAAAAGGAGTCAACGCTTCACCTAGTGCTTCGTCTGCGTGGTGGC 527726 Score = 122 bits (134), Expect = 8e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||||| ||||| || ||||| || ||||| || || | | Sbjct 519653 ATGCAAATCTTTGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 519594 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || || ||||| ||||||||||| || || || || ||||| Sbjct 519593 GATTCGATTGAGAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCGGATCAG 519534 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTATA 24881 || |||||||||||||| || |||||| ||||||| ||| || | | || || || | Sbjct 519533 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAGGACGGTCG-GACTC-TTTCCGACTACA 519476 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||||||||| || || || ||| | ||| | || |||| || ||| Sbjct 519475 ACATTCAAAAGGAGTCAACGCTTCACCTAGTGCTTCGTCTGCGTGGTGGC 519426 Score = 114 bits (126), Expect = 1e-20 Identities = 155/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || |||||||| || || || |||||| | || || || | | Sbjct 527955 ATGCAGATATTTGTGAAGACGCTAACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 528014 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||| | || || |||||| ||||| || || || ||||| || || || Sbjct 528015 GACTCGATAGAGAAAGTGAAGGCAAAGATACAAGAAAAGGAGGGCATACCACCAGACCAG 528074 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACAT-GTCAGATTAT 24880 ||||| ||||||| || || || ||| |||||||| ||| |||| ||| || || Sbjct 528075 CAACGAATGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGC---ACATTGTCCGACTAC 528131 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||||| ||||||||||| || ||| | ||| Sbjct 528132 AACATTCAGAAGGAATCGACCCTTCACCTTGTG 528164 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || ||||| || || || || ||||| ||||| ||| ||| Sbjct 526587 ATGCAGATCTTTGTCAAGACTCTAACAGGCAAGACCATAACGCTAGAAGTTGAACCCAGT 526646 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | ||||| ||||||||||| || || || || || || |||||| Sbjct 526647 GATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAGGGCATTCCACCAGATCAA 526706 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||| || || || || ||| |||| || | | | || ||||| ||| Sbjct 526707 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTGATTACAAC 526766 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || || | ||| | ||| | || || || Sbjct 526767 ATTCAAAAGGAGTCAACGCTTCATCTCGTGCTTCGACTCCGTGGTGG 526813 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || |||||||| || || || |||||| | || || || | | Sbjct 519080 ATGCAGATATTTGTGAAGACGCTAACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 519021 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||| | || || ||||| || || || || || || ||||| || || Sbjct 519020 GACTCGATAGAGAATGTGAAGGCTAAGATTCATGATAAGGAGGGCATTCCTCCTGACCAG 518961 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACAT-GTCAGATTAT 24880 ||||| |||||||| || || || ||| |||||||| ||| |||| ||| || || Sbjct 518960 CAACGATTGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGC---ACATTGTCCGACTAC 518904 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||||| ||||||||||| || ||| | ||| Sbjct 518903 AACATTCAGAAGGAATCGACCCTTCACCTTGTG 518871 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || |||||||| ||||| || || || || || || ||| Sbjct 537485 ATGCAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAGT 537544 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||| ||||| || || || || || || || Sbjct 537545 GACTCGATTGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 537604 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| || || || ||| |||| ||| | | | | || || || ||| Sbjct 537605 CAACGATTGATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTATCTGACTACAAC 537664 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGA 24934 || |||||||| || || || ||| | ||| | || | || |||||| || Sbjct 537665 ATCCAAAAGGAGTCCACCCTTCACCTTGTGCTTCGTCTTCGTGGAGGCTGA 537715 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || ||||| || || || || |||||| | || || || | | Sbjct 519425 ATGCAAATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 519366 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||| | || || |||||||| ||||| || || || || || || || Sbjct 519365 GACTCGATAGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 519306 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || || ||| | || ||| | | |||| || || ||| Sbjct 519305 CAACGATTGATCTTTGCAGGAAAGCAGTTAGAAGATGGTCGCACGTTGTCCGACTACAAC 519246 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || || ||||| || ||||||||| | ||| | || || || Sbjct 519245 ATTCAGAAAGAGTCGACGCTTCACTTGGTGCTTCGACTCCGTGGTGG 519199 Score = 104 bits (114), Expect = 2e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || | || || ||||| || || || || || || ||| Sbjct 537028 GATGCAAATCTTCGTGAAGACTTTGACTGGCAAAACAATCACACTGGAGGTGGAGCCCAG 537087 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || |||| | || || |||||| || ||||| || || || || || ||||| Sbjct 537088 TGACTCAATAGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCA 537147 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| |||||||||| || || ||| |||| ||| | | | |||| || || || Sbjct 537148 GCAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGCACCTTGTCTGACTACAA 537207 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 ||| ||||||||||| || || || |||| Sbjct 537208 CATCCAAAAGGAATCCACTCTTCATCTTG 537236 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || ||||| || || || || |||||| | || || || | | Sbjct 527727 ATGCAAATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGT 527786 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||| | || || |||||||| || || || || || || || || || Sbjct 527787 GACTCGATAGAGAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGACCAG 527846 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || || ||| | || ||| | | |||| || || ||| Sbjct 527847 CAACGATTGATCTTTGCAGGAAAGCAGTTAGAAGATGGTCGCACGTTGTCCGACTACAAC 527906 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || || ||||| || ||||||||| | ||| | || || || Sbjct 527907 ATTCAGAAAGAGTCGACGCTTCACTTGGTGCTTCGACTCCGTGGTGG 527953 >seq15 Length=1207391 Score = 123 bits (136), Expect = 2e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| || || || || || || | | Sbjct 831846 ATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAGT 831787 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | |||||| ||| |||||||||||||| |||||||| || |||||| Sbjct 831786 GATTCCATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCAA 831727 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | ||||| ||||| || ||| ||||||| | | | | || || ||||| Sbjct 831726 CAACGGCTTATCTTCGCCGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGACTATAAT 831667 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||||||||| |||||||| || |||| Sbjct 831666 ATTCAAAAGGAGTCGACACTCCATCTTG 831639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449858796332000