Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5 145 1e-28 seq385 138 2e-26 seq211 132 8e-25 seq184 131 3e-24 seq377 129 9e-24 seq316 129 9e-24 seq183 129 9e-24 seq133 120 5e-21 seq276 118 2e-20 >seq5 Length=2931570 Score = 145 bits (160), Expect = 1e-28 Identities = 233/330 (71%), Gaps = 11/330 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||| || |||||||||| ||||| |||||| |||||| |||||||| || |||||| Sbjct 2232963 CCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTC 2233022 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTG--CCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||||||| ||||||| || || || || || || || | |||||| | || || | Sbjct 2233023 TTGAGCCAGAAGATGG--AAGCAAATGAACCAGAAAAGAATACGCCCTCAATAGCAGCGA 2233080 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTG--ATCCACTTCATCGC 794516 | | || || ||||| || | | || ||| | || ||| |||||| | | || Sbjct 2233081 ACGCCACCAGACGCTCCGCGTACG-GT----GCCTTTTTATTTGCAATCCACCTAAGAGC 2233135 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||| || ||||| || || | |||| ||| | |||||| ||| || ||| Sbjct 2233136 CCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACAGAAAGTCGCG 2233195 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 || ||||| |||||||||||||| || || || || ||||| | || || || ||||| Sbjct 2233196 TTCTACCGGATCCTTGACGTAGGTATCAATCAGAAGAGAGTACATTTCAGAATGAATGTT 2233255 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| | ||||| || | |||||||| || Sbjct 2233256 TTCTACGGCGACTTGCATTCCATAAAAACA 2233285 >seq385 Length=66281 Score = 138 bits (152), Expect = 2e-26 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || || |||||| | |||| || || ||| Sbjct 28396 TGTACTTGGTCACAGCCTTCGTGCCCTCCGACACCGCGTGCTTCGCCAACTCACCCGGCA 28455 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||| ||||| ||| | ||| || |||||| | Sbjct 28456 GCAGCAGACGCACTGCAGTCTGAATCTCTCGGCTCGTGATAGTCGACTTCTTGTTGTAGT 28515 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| || | | ||||| | | || || |||| |||||||| || || ||||||| Sbjct 28516 GCGCCAACCGACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 28575 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| || ||||||||| ||| ||||||||||| |||||||||| Sbjct 28576 TGATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAGCACCTTGT 28635 Query 1485710 A 1485710 | Sbjct 28636 A 28636 Score = 138 bits (152), Expect = 2e-26 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || || |||||| | |||| || || ||| Sbjct 60071 TGTACTTGGTCACAGCCTTCGTGCCCTCCGACACCGCGTGCTTCGCCAACTCACCCGGCA 60130 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||| ||||| ||| | ||| || |||||| | Sbjct 60131 GCAGCAGACGCACTGCAGTCTGAATCTCTCGGCTCGTGATAGTCGACTTCTTGTTGTAGT 60190 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| || | | ||||| | | || || |||| |||||||| || || ||||||| Sbjct 60191 GCGCCAACCGACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 60250 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| || ||||||||| ||| ||||||||||| |||||||||| Sbjct 60251 TGATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAGCACCTTGT 60310 Query 1485710 A 1485710 | Sbjct 60311 A 60311 >seq211 Length=118686 Score = 132 bits (146), Expect = 8e-25 Identities = 174/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || || |||||| | |||| || || ||| Sbjct 107792 TGTACTTGGTCACAGCCTTCGTGCCCTCCGACACTGCGTGCTTCGCCAACTCACCCGGCA 107851 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||| ||||| || | ||| || |||||| | Sbjct 107852 GCAGCAGACGCACTGCAGTCTGAATCTCTCGACTCGTGATAGTCGACTTCTTGTTGTAGT 107911 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| || | | ||||| | | || || |||| |||||||| || || ||||||| Sbjct 107912 GCGCCAACCGACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 107971 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| || ||||||||| ||| ||||||||||| |||||||||| Sbjct 107972 TGATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAGCACCTTGT 108031 Query 1485710 A 1485710 | Sbjct 108032 A 108032 >seq184 Length=144950 Score = 131 bits (144), Expect = 3e-24 Identities = 176/244 (72%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || || |||||| | |||| || || ||| Sbjct 15133 TGTACTTGGTCACAGCCTTCGTGCCCTCCGACACTGCGTGCTTCGCCAACTCACCCGGCA 15192 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGG---GTGCCGATCGTGTTGCGCTTGTTAG 1485586 | ||| ||||| || ||||| ||||| || ||| | ||| || |||||| Sbjct 15193 GCAACAGACGCACTGCAGTCTGAATCTCTCGACTCGTGATGGTCGACTT---CTTGTTGT 15249 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 | |||||| || | | ||||| | | || || |||| ||||| || || || |||| Sbjct 15250 AGTGCGCCAACCGACTCGACTCGGCGGCAATTCGCTCGAAGATGTCATTCACGAAGGAGT 15309 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||||||||||| || ||||||||| ||| ||||||||||| ||||||| Sbjct 15310 TCATGATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAGCACCT 15369 Query 1485707 TGTA 1485710 |||| Sbjct 15370 TGTA 15373 >seq377 Length=67819 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| | || |||||| | |||| || || ||| Sbjct 65426 TGTACTTGGTCACAGCCTTGGTGCCCTCCGGCACCGCGTGCTTCGCCAACTCACCCGGCA 65367 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||||||||| | | | ||| || |||||| Sbjct 65366 GCAGCAGACGCACAGCAGTCTGGATCTCTCTGCTCGTGATTGTCGACTTCTTGTTGTAAT 65307 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| || | | ||||| | | ||||| |||| |||||||| || || ||||||| Sbjct 65306 GCGCCAACCGACTCGACTCGGCGGCAATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 65247 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | |||||||||| || ||||||||| ||| || |||||||| |||||||||| Sbjct 65246 TTATCGACATCGCCTTCGACGAGATGCCCGTGTCAGGATGCACCTGACGCAGCACCTTGT 65187 Query 1485710 A 1485710 | Sbjct 65186 A 65186 >seq316 Length=81186 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || || |||||| | |||| || || ||| Sbjct 35414 TGTACTTGGTCACAGCCTTGGTGCCCTCCGACACCGCGTGCTTCGCCAACTCACCCGGCA 35473 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||| ||||| | | | ||| || |||||| Sbjct 35474 GCAGCAGACGCACAGCAGTCTGAATCTCTCTGCTCGTGATTGTCGACTTCTTGTTGTAAT 35533 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| || | | ||||| | | ||||| |||| |||||||| || || ||||||| Sbjct 35534 GCGCCAACCGACTCGACTCGGCGGCAATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 35593 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | |||||||||| || ||||||||| ||| || |||||||| |||||||||| Sbjct 35594 TTATCGACATCGCCTTCGACGAGATGCCCGTGTCAGGATGCACCTGACGTAGCACCTTGT 35653 Query 1485710 A 1485710 | Sbjct 35654 A 35654 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || || |||||| | |||| || || ||| Sbjct 38211 TGTACTTGGTCACAGCCTTGGTGCCCTCCGACACCGCGTGCTTCGCCAACTCACCCGGCA 38270 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||| ||||| | | | ||| || |||||| Sbjct 38271 GCAGCAGACGCACAGCAGTCTGAATCTCTCTGCTCGTGATTGTCGACTTCTTGTTGTAAT 38330 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| || | | ||||| | | ||||| |||| |||||||| || || ||||||| Sbjct 38331 GCGCCAACCGACTCGACTCGGCGGCAATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 38390 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | |||||||||| || ||||||||| ||| || |||||||| |||||||||| Sbjct 38391 TTATCGACATCGCCTTCGACGAGATGCCCGTGTCAGGATGCACCTGACGCAGCACCTTGT 38450 Query 1485710 A 1485710 | Sbjct 38451 A 38451 >seq183 Length=145542 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || || |||||| | |||| || || ||| Sbjct 9312 TGTACTTGGTCACAGCCTTGGTGCCCTCCGACACCGCGTGCTTCGCCAACTCACCCGGCA 9253 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||| ||||| | | | ||| || |||||| Sbjct 9252 GCAGCAGACGCACAGCAGTCTGAATCTCTCTGCTCGTGATTGTCGACTTCTTGTTGTAAT 9193 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| || | | ||||| | | ||||| |||| |||||||| || || ||||||| Sbjct 9192 GCGCCAACCGACTCGACTCGGCGGCAATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 9133 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | |||||||||| || ||||||||| ||| || |||||||| |||||||||| Sbjct 9132 TTATCGACATCGCCTTCGACGAGATGCCCGTGTCAGGATGCACCTGACGCAGCACCTTGT 9073 Query 1485710 A 1485710 | Sbjct 9072 A 9072 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || || |||||| | |||| || || ||| Sbjct 65555 TGTACTTGGTCACAGCCTTGGTGCCCTCCGACACCGCGTGCTTCGCCAACTCACCCGGCA 65614 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||| ||||| | | | ||| || |||||| Sbjct 65615 GCAGCAGACGCACAGCAGTCTGAATCTCTCTGCTCGTGATTGTCGACTTCTTGTTGTAAT 65674 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| || | | ||||| | | ||||| |||| |||||||| || || ||||||| Sbjct 65675 GCGCCAACCGACTCGACTCGGCGGCAATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 65734 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | |||||||||| || ||||||||| ||| || |||||||| |||||||||| Sbjct 65735 TTATCGACATCGCCTTCGACGAGATGCCCGTGTCAGGATGCACCTGACGCAGCACCTTGT 65794 Query 1485710 A 1485710 | Sbjct 65795 A 65795 >seq133 Length=234970 Score = 120 bits (132), Expect = 5e-21 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || || |||||| | |||| || ||| ||| Sbjct 54448 TGTACTTGGTCACAGCCTTGGTGCCCTCCGACACCGCGTGCTTAGCCAACTCACCGGGCA 54507 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||||||||| | | ||| || |||||| Sbjct 54508 GCAGCAGACGCACAGCAGTCTGGATCTCTCTACTCGTGATTGTCGATTTCTTGTTGTAAT 54567 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| |||| | |||| | | || || |||| ||||| || || || ||||||| Sbjct 54568 GCGCCAAACGGCTCGATTCGGCGGCAATCCGCTCGAAGATGTCATTCACGAAGGAGTTCA 54627 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 |||||||||||| || ||||||||| ||| |||||||| || Sbjct 54628 TGATCGACATCGCCTTCGATGAGATGCCCGTGTCTGGGTGCACTTG 54673 >seq276 Length=91072 Score = 118 bits (130), Expect = 2e-20 Identities = 175/247 (71%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 || |||||||||| || |||||||| ||||| || || |||||| |||| | || || Sbjct 88673 CGGTGTACTTGGTCACAGCCTTGGTGCCCTCCGATACCGCGTGCTTGGCTAACTCACCCG 88614 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTC---GCGGGTGCCGATCGTGTTGCGCTTGT 1485583 || | ||| |||| || ||||| ||||| || ||| ||| || ||||| Sbjct 88613 ACAGCAGCAGACGCATAGCAGTCTGAATCTCCTTGCTCGTGATTGTCGACTT---CTTGT 88557 Query 1485584 TAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACG 1485643 | |||||| || | | ||||| | | ||||| |||| |||||||| || || | Sbjct 88556 TGTAATGCGCCAACCGACTCGACTCGGCGGCAATGCGCTCGAAGATGTCGTTCACGAAGG 88497 Query 1485644 AGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCA 1485703 ||||||| |||||||||| || ||||||||| ||| || |||||||| |||| Sbjct 88496 AGTTCATTATCGACATCGCCTTCGACGAGATGCCCGTGTCAGGATGCACCTGACGCAGCA 88437 Query 1485704 CCTTGTA 1485710 ||||||| Sbjct 88436 CCTTGTA 88430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915512415529100