Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq33 86.0 5e-12 seq52 82.4 6e-11 >seq33 Length=831474 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 105086 GCACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGA 105145 ||||||||||||||| ||||| ||||| || || | | |||||||| || || |||| Sbjct 346074 GCACGGCTTTCACGTCCACGAATTCGGTGACACAACACAAGGCTGCACTTCGGCTGGCGC 346133 Query 105146 GCACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCG 105204 ||||| || ||| ||| || |||| ||||| ||||| || || || || | || || | Sbjct 346134 CCACTTTAATCCCCACG-GCAAAAACCACGGTGCTCCTGATGCTGCTGAGCGACATGTTG 346192 Query 105205 GCGACCTGGGCAATGT 105220 | ||||| || || || Sbjct 346193 GGGACCTCGGTAACGT 346208 >seq52 Length=575441 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| ||| |||| ||||| ||||| || | ||| || | || Sbjct 526359 ATGCAGATTTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTAGAAGTTGAACCCAGC 526418 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||| | | | | ||||| ||||| ||||| |||||| | || || ||| Sbjct 526419 GATTCGATTGAGAACGTAAAGGCGAAGATCCAAGATAAGGAAGGCATTCCACCAGACCAG 526478 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | ||| ||||| || ||||||| | | || | | ||||||||| Sbjct 526479 CAGCGTTTGATCTTTGCTGGTAAGCAATTGGAGGATGGCCGCACTCTTTCCGACTACAAC 526538 Query 107736 ATTCAAAAGGAGTCTACG 107753 |||||||||||||| ||| Sbjct 526539 ATTCAAAAGGAGTCAACG 526556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398843256954100