Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq52 118 1e-21 seq5 116 4e-21 seq4 109 5e-19 >seq52 Length=575441 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| || || || ||||| || | ||| | | | || || | |||||||| Sbjct 537682 GGTGGACTCCTTTTGGATGTTGTAGTCAGATAGGGTGCGGCCA-TCTTCCAACTGCTTGC 537624 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || |||||||| || || ||||| |||||||| ||||||| || Sbjct 537623 CAGCGAAGATCAATCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCT 537564 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || ||| |||||||||| || | |||| ||||||||||| |||| Sbjct 537563 TCACGTTCTCAATCGAGTCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTTAGAG 537504 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 537503 TCTTCACGAAGATCTGCAT 537485 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||||||||| || ||||| | | || | | |||| ||||| | |||||| | Sbjct 527011 GTCGACTCTTTCTGAATGTTGTAGT--CAGATAGAGTACGACCATCCTCCAACTGCTTTC 526954 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || |||||||| || || ||||| |||||||| |||||| || Sbjct 526953 CTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCCT 526894 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | | ||| |||||||||| || | ||||| ||| |||||||| || | Sbjct 526893 TCACGTTCTCTATAGAGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGG 526834 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 526833 TTTTAACAAATATCTGCAT 526815 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| || || || || || || || ||| ||| | || || | |||||| | Sbjct 526328 GGTTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCA-TCTTCCAACTGCTTCC 526270 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| | || || || |||||||| || || ||||| |||||||| ||||| || Sbjct 526269 CCGCAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCT 526210 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| |||| ||||| || | || | || ||||||||||||| Sbjct 526209 TCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTCAGAG 526150 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || ||||| ||||| Sbjct 526149 TTTTCACAAAAATTTGCAT 526131 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| ||| || |||| ||| | || || | |||||| || Sbjct 519229 GTCGACTCTTTCTGAATGTTGTAGTCGGACAACGTGCGACCA-TCTTCTAACTGCTTTCC 519287 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || |||||||| || |||||||| |||||||| |||||| ||| Sbjct 519288 TGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTT 519347 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | || ||| | |||||||| || | || | || || || ||||| || Sbjct 519348 CACATTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTCAGCGT 519407 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || || |||||| Sbjct 519408 CTTCACAAATATTTGCATG 519426 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || || ||||| ||| | ||| | | | ||||| | ||||| || Sbjct 526555 GTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCA-TCCTCCAATTGCTTACC 526497 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | ||||||||||| || || ||||||||||| || |||||| ||| Sbjct 526496 AGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGGATCTTCGCCTT 526437 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || ||| |||| || || || | || | ||| |||||||| ||||| Sbjct 526436 TACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGT 526377 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 526376 CTTGACAAAAATCTGCAT 526359 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| ||| || |||| ||| | || || | |||||| || Sbjct 527923 GTCGACTCTTTCTGAATGTTGTAGTCGGACAACGTGCGACCA-TCTTCTAACTGCTTTCC 527865 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || |||||||| || |||||||| ||||| || |||||| ||| Sbjct 527864 TGCAAAGATCAATCGTTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCCTT 527805 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | || ||| | |||||||| || | || | || || || ||||| || Sbjct 527804 CACGTTCTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTCAGCGT 527745 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || || |||||| Sbjct 527744 CTTCACAAATATTTGCATG 527726 >seq5 Length=2931570 Score = 116 bits (128), Expect = 4e-21 Identities = 184/261 (70%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| ||||| |||||||| ||||| || || || ||||||||||| ||||| || Sbjct 2232939 AGGCATGCAAAATCCGTGTGGAGGCCTTCATCTCGACTGATCAGCTCGTTACTAAAGGTG 2232998 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 ||||| ||||||| || | |||||| |||| |||| ||||| || |||||| Sbjct 2232999 AGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCAAATGAACCAGAAAAG 2233058 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819 || |||||||| | || || || |||| ||||| || ||| ||| | || | Sbjct 2233059 AATACGCCCTCAATAGCAGCGAACGCCACCAGACGCTCCGCGTACGGTGCCTTTTTATTT 2233118 Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAA-CGC 120878 | |||||| | | ||||| |||||||| || || ||||||| || | ||| || Sbjct 2233119 GCAATCCACCTAAGAGCCCAATCGGCCTTCTTAGCAACACACGGCA-ACGTTTGAATGGC 2233177 Query 120879 GTTCAGCAGCATGTCGCGCTC 120899 ||| | ||| | |||||| || Sbjct 2233178 GTTAAACAGAAAGTCGCGTTC 2233198 >seq4 Length=3027866 Score = 109 bits (120), Expect = 5e-19 Identities = 146/201 (73%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520 ||| ||||| ||||| ||||||||||| || | ||| ||||| | |||||| Sbjct 343668 GGTTGACTCCTTCTGAATATTGTAATCAG--ATAAGGAACGTCCATCCTCCAATTGCTTG 343725 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || |||| || ||||| ||||| || || || || |||||||| ||||| | Sbjct 343726 CCAGCAAAAATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTAGCC 343785 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | ||||| | |||| |||||| || || | |||| ||||||||||| ||| Sbjct 343786 TTCACATTCTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGA 343845 Query 133641 GTTTTTACGAAAATCTGCATG 133661 ||||| || |||||||||||| Sbjct 343846 GTTTTCACAAAAATCTGCATG 343866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483379104956000