Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq52 113 3e-20 >seq52 Length=575441 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||| | || || || ||| ||||| |||||||| ||||| Sbjct 527725 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 527666 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || ||||| ||||| || ||||| ||||||||||||||||| | || Sbjct 527665 AGAGTGCGACCATCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 527606 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| |||||||| ||| || ||| |||| || | | || || | || || Sbjct 527605 ATACCCTCTTTGTCTTGAATCTTGGCCTTC-ACATTCTCAATCGAATCACTAGGCTCAAC 527547 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | ||| ||||| |||||||||||| Sbjct 527546 CTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTTACGAAGATCTGCATA 527498 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||| | || || || ||| ||||| |||||||| ||||| Sbjct 519427 CCACCACGCAGACGAAGCACTAGGTGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 519486 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| ||||| ||||| || ||||| ||||||||||||||||| | || Sbjct 519487 AGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 519546 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| |||||||| ||| || ||| |||| || | | || || | || || Sbjct 519547 ATACCCTCTTTGTCTTGAATCTTGGCCTTC-ACATTCTCAATCGAATCACTAGGCTCAAC 519605 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||| || |||||||| ||||| Sbjct 519606 CTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACAAAGATTTGCAT 519653 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 |||| ||| | ||| || || ||| ||||| |||||||| ||||| || ||||| | Sbjct 526573 CGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCA 526514 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||||||| || || ||||| |||||||||||||| ||| | || | ||||| || Sbjct 526513 TCCTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTA 526454 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || || ||| | | || | || | | ||||| | ||| || || | ||| || Sbjct 526453 TCTTGGATCTTC-GCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTAT 526395 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || |||| || || ||||| |||||||| Sbjct 526394 GGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 526359 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || | ||| | ||| || || ||| ||||| ||||||||||| || Sbjct 526814 ACCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGA 526755 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| ||||| || || || || |||||||||||||| |||||| | || Sbjct 526754 AAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGG 526695 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || || ||| | | || | || | | || || | ||| | Sbjct 526694 AATGCCCTCCTTATCTTGGATCTTC-GCCTTTACGTTCTCAATCGAATCACTGGGTTCAA 526636 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||| || || || ||||||| || || |||||||||||||| Sbjct 526635 CTTCTAGCGTTATGGTCTTGCCTGTTAGAGTCTTGACAAAGATCTGCAT 526587 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||| | || || || || || || |||||||| || || Sbjct 527498 ACCACCACGCAGACGAAGCACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGA 527439 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || ||||| || || || || || ||||||||||||||||| |||| Sbjct 527438 TAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGCGG 527379 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || || || |||||| ||| |||| || | |||||||| | ||||| Sbjct 527378 AATACCCTCCTTATCCTGAATTTTGGCCTTC-ACATTCTCAATTGTGTCGCTAGGTTCCA 527320 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||| || || || || || | ||| || || || || ||||| Sbjct 527319 CTTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTCACGAATATTTGCAT 527271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328676358048000