Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq52 111 4e-19 seq15 96.9 8e-15 seq4 84.2 5e-11 >seq52 Length=575441 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| || ||||| || || || || || || ||||| ||||| |||| Sbjct 527958 CAGATATTTGTGAAGACGCTAACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGTGAC 528017 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || ||| ||| |||||| |||||||| || || || || ||| ||| Sbjct 528018 TCGATAGAGAAAGTGAAGGCAAAGATACAAGAAAAGGAGGGCATACCACCAGACCAGCAA 528077 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | |||||||| || ||||||||||| ||||| | || ||| |||| |||||| | Sbjct 528078 CGAATGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGCACATTGTCCGACTACAACATT 528137 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || || ||||||||||| Sbjct 528138 CAGAAGGAATCGACCCTTCACCTTGT 528163 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| || ||||| || || || || || || ||||| ||||| |||| Sbjct 519077 CAGATATTTGTGAAGACGCTAACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGTGAC 519018 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| |||||||| || || || || ||| || ||| ||| Sbjct 519017 TCGATAGAGAATGTGAAGGCTAAGATTCATGATAAGGAGGGCATTCCTCCTGACCAGCAA 518958 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | |||||||| || ||||||||||| ||||| | || ||| |||| |||||| | Sbjct 518957 CGATTGATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGCACATTGTCCGACTACAACATT 518898 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || || ||||||||||| Sbjct 518897 CAGAAGGAATCGACCCTTCACCTTGT 518872 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| ||||| || || || ||||| ||||| ||||| |||| Sbjct 526818 CAGATATTTGTTAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGTGAC 526877 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| ||||| || || || || || ||| || ||| ||| Sbjct 526878 TCTATAGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCAGACCAGCAA 526937 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | |||||||| |||||||||||||| ||||| | ||| | | || |||||| | Sbjct 526938 CGATTGATCTTCGCAGGAAAGCAGTTGGAGGATGGTCGTACTCTATCTGACTACAACATT 526997 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||||||||| || |||||| Sbjct 526998 CAGAAAGAGTCGACGCTTCAC 527018 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| ||||| |||| ||||| |||| || | || || ||| | Sbjct 537053 ACTGGCAAAACAATCACACTGGAGGTGGAGCCCAGTGACTCAATAGAGAATGTGAAGGCA 537112 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || || ||| || || ||| | || ||||| || |||||| Sbjct 537113 AAGATTCAGGACAAGGAGGGCATTCCACCAGATCAGCAACGCCTGATCTTTGCGGGAAAG 537172 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||||||||| | || ||| | || |||||| |||| || || || |||||||| Sbjct 537173 CAGTTGGAAGATGGTCGCACCTTGTCTGACTACAACATCCAAAAGGAATCCACTCTTCAT 537232 Query 206374 CTTGT 206378 ||||| Sbjct 537233 CTTGT 537237 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || ||||| || || || || || || ||||| ||||| |||| Sbjct 519422 CAAATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGTGAC 519363 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| ||||| || || || || || || |||||| ||| Sbjct 519362 TCGATAGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAGCAA 519303 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || ||||||||||| |||||||| | || ||| |||| |||||| | Sbjct 519302 CGATTGATCTTTGCAGGAAAGCAGTTAGAAGATGGTCGCACGTTGTCCGACTACAACATT 519243 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||||||||| || |||||| Sbjct 519242 CAGAAAGAGTCGACGCTTCAC 519222 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || || || |||| |||||| |||||| | || Sbjct 526146 AAAACTCTGACCGGCAAGACAATTACGCTGGAGGTGGAACCCAGCGACACAATTGAGAAT 526205 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || || || ||| |||||| ||| | || ||||| Sbjct 526206 GTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAGCAACGTCTAATCTTT 526265 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| | || || | || || ||| | || || ||||| Sbjct 526266 GCGGGGAAGCAGTTGGAAGATGGTCGCACCCTGTCTGACTATAACATTCAAAAGGAGTCA 526325 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || |||||||| | ||||||| Sbjct 526326 ACCCTCCACCTTGTGCTCCGACTTCG 526351 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || ||||| || || || || || || ||||| ||||| |||| Sbjct 527730 CAAATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGTGAC 527789 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| ||||| || || || || || || |||||| ||| Sbjct 527790 TCGATAGAGAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGACCAGCAA 527849 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || ||||||||||| |||||||| | || ||| |||| |||||| | Sbjct 527850 CGATTGATCTTTGCAGGAAAGCAGTTAGAAGATGGTCGCACGTTGTCCGACTACAACATT 527909 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||||||||| || |||||| Sbjct 527910 CAGAAAGAGTCGACGCTTCAC 527930 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| ||||| |||| ||||| |||| | | || Sbjct 537500 AAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAGTGACTCGATTGAGAAC 537559 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || || || || ||| || ||| ||| || | |||||| Sbjct 537560 GTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAACGATTGATCTTC 537619 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| | || | | || |||||| |||| || ||||| Sbjct 537620 GCTGGCAAGCAGTTGGAAGATGGCCGCACCCTATCTGACTACAACATCCAAAAGGAGTCC 537679 Query 206365 ACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 537680 ACCCTTCACCTTGT 537693 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || ||||| || || || || || || ||||| ||||| |||| Sbjct 527046 CAAATATTTGTGAAGACGCTGACTGGGAAGACAATTACGTTGGAGGTGGAGCCGAGTGAC 527105 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| ||||| || || || || || || |||||| ||| Sbjct 527106 TCGATAGAGAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGACCAGCAA 527165 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || |||||||||||||| ||||| | || ||| |||| |||||| | Sbjct 527166 CGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGTCGCACGTTGTCCGACTACAACATT 527225 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || |||||| Sbjct 527226 CAGAAGGAGTCGACGCTTCAC 527246 >seq15 Length=1207391 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 ||| ||||| | |||||| || || || ||||| || || | ||||||||| | | ||| Sbjct 831625 TCGTAGTCTTAGAACAAGATGGAGTGTCGACTCCTTTTGAATATTATAGTCGGAGAGAGT 831684 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || || || |||| |||||| |||||||||||||||||||||||| Sbjct 831685 CCGCCCGTCCTCCAACTGCTTACCGGCGAAGATAAGCCGTTGTTGA 831730 Score = 91.5 bits (100), Expect = 3e-13 Identities = 108/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||||||| || ||||| ||||| ||||| || || ||| | ||||||||||| Sbjct 831768 AAAGCAAAA-ATCCAAGACAAAGAGGGAATACCACCAGATCAACAACGGCTTATCTTCGC 831710 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 ||| ||||||||||| || || ||||| | |||| || || | || || ||||| || Sbjct 831709 CGGTAAGCAGTTGGAGGACGGGCGGACTCTCTCCGACTATAATATTCAAAAGGAGTCGAC 831650 Query 206367 TCTTCACCTTGTTTTGAGACTTCGA 206391 || || |||||| | ||||| ||| Sbjct 831649 ACTCCATCTTGTTCTAAGACTACGA 831625 >seq4 Length=3027866 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| |||||| | || || || || || Sbjct 343862 CAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAGCCCTCCGAT 343803 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| ||||||||||| || || || ||| || ||| || Sbjct 343802 TCTATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAGGGGATTCCACCAGACCAACAG 343743 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||| || || || ||||| ||||| |||||| | | || | |||||||| | Sbjct 343742 CGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAATATT 343683 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||||||||| Sbjct 343682 CAGAAGGAGTCAACCCTTCACCTTGT 343657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181716319654900