Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq52 93.3 4e-14 seq15 84.2 2e-11 seq33 82.4 7e-11 >seq52 Length=575441 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| ||||||||||| ||||| || ||| || |||||| | ||| || || | Sbjct 526326 TTGACTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCG 526267 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||||||||| || || || || || ||||| || || || ||| || |||| Sbjct 526266 CAAAGATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCA 526207 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || ||| | || ||||| || | ||| | || || || |||||||||| Sbjct 526206 CATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTCAGAGTTT 526147 Query 132108 TTATGAAAATCTGCAT 132123 | | ||||| ||||| Sbjct 526146 TCACAAAAATTTGCAT 526131 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| |||||||||||||||||| | || || ||| || | || ||||| | Sbjct 526554 TTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCCAATTGCTTACCAG 526495 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| | |||||| || ||||| || |||||||| ||||| || || || | Sbjct 526494 CAAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGGATCTTCGCCTTTA 526435 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | | |||| | || || ||||| | ||| | || || || || ||||| | Sbjct 526434 CGTTCTCAATCGAATCGCTGGGTTCAACTTCTAGCGTTATGGTCTTGCCGGTTAGAGTCT 526375 Query 132108 TTATGAAAATCTGCAT 132123 | | ||||||||||| Sbjct 526374 TGACAAAAATCTGCAT 526359 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| |||||||||||||||||| | || || ||| || | |||||| || | Sbjct 527694 TTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCCTCCAACTGTTTGCCAG 527635 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| | |||||| ||||| || || || || ||||| || ||| || |||| Sbjct 527634 CAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCA 527575 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | | ||| | ||||| || |||| || | || || || || || || | Sbjct 527574 CATTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCT 527515 Query 132108 TTATGAAAATCTGCAT 132123 ||| ||| |||||||| Sbjct 527514 TTACGAAGATCTGCAT 527499 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || |||||||||||||| | |||||| ||| || | ||| || || | Sbjct 527464 GATTCCTTCTGAATGTTGTAGTCTGATAGGGTACGACCATCCTCCAACTGCTTGCCAGCG 527405 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | |||||| ||||| || || || || || ||||| |||||| |||| Sbjct 527404 AAGATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCCTGAATTTTGGCCTTCACA 527345 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | || |||||||| | ||| | || || |||||||| || || Sbjct 527344 TTCTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTC 527285 Query 132110 ATGAAAATCTGCATG 132124 | ||| || |||||| Sbjct 527284 ACGAATATTTGCATG 527270 >seq15 Length=1207391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||| || |||||| | || ||| || || | ||| ||||||| Sbjct 831653 GACTCCTTTTGAATATTATAGTCGGAGAGAGTCCGCCCGTCCTCCAACTGCTTACCGGCG 831712 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || || ||||||||||| ||||| || ||||| || |||||| ||| | Sbjct 831713 AAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACG 831772 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | ||| | ||||| || || | || | ||||| ||||| ||||| || Sbjct 831773 TTCTCAATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTA 831832 Query 132110 ATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 831833 ACAAAAATTTGCAT 831846 >seq33 Length=831474 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 51738 ACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCGCTGCCG 51797 || || || | ||| || || || ||| || || | ||||| ||||||| ||||| Sbjct 346208 ACGTTACCGAGGTCCCCAACATGTCGCTCAGCAGCATCAGGAGCACCGTGGTTTTTGCCG 346149 Query 51798 GTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGC 51857 ||| || ||||| |||| ||||| |||||||| | | ||||| ||||||||||| Sbjct 346148 TGGGGATTAAAGTGGGCGCCAGCCGAAGTGCAGCCTTGTGTTGTGTCACCGAATTCGTGG 346089 Query 51858 ACGTGGAATCCGTGC 51872 ||||| || |||||| Sbjct 346088 ACGTGAAAGCCGTGC 346074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476570092284000