Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1554 82.4 2e-12 seq1386 82.4 2e-12 seq1110 82.4 2e-12 seq535 82.4 2e-12 seq478 82.4 2e-12 seq229 78.8 3e-11 >seq1554 Length=11257 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 8006 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 7949 >seq1386 Length=13677 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 || ||||||||||||||| |||||||||||||||||| ||||||||||| | |||||| Sbjct 10977 TATCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCTGGTTCGATCCCGGG 10920 >seq1110 Length=19562 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 19414 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 19357 >seq535 Length=46930 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 || ||||||||||||||| |||||||||||||||||| ||||||||||| | |||||| Sbjct 26314 TATCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCTGGTTCGATCCCGGG 26257 >seq478 Length=52655 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 34284 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATCCCGGG 34341 >seq229 Length=108607 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||| ||||||||| |||||||||||||||||| ||||| ||||| | |||||| Sbjct 100092 TAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGAACCCGGG 100149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848403850500