Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5 174 2e-37 seq385 107 3e-17 seq211 107 3e-17 seq184 107 3e-17 seq377 102 1e-15 seq316 102 1e-15 seq183 102 1e-15 seq276 93.3 6e-13 seq133 89.7 7e-12 seq189 87.8 3e-11 >seq5 Length=2931570 Score = 174 bits (192), Expect = 2e-37 Identities = 308/442 (70%), Gaps = 13/442 (3%) Strand=Plus/Minus Query 1455875 CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGG 1455934 |||||| || ||||| | | ||| | || ||| ||||| ||||| ||||||||||| Sbjct 2233397 CGAGCGTCACTTCATTTCGTATGTCTTGGC-TTTCTTCGCGGCCAGTGATGGCATCGTTA 2233339 Query 1455935 CCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTT 1455994 || || || | ||| || ||||||||| | || ||||| |||| |||| Sbjct 2233338 ATGAAAATCTAACTTTGAATTTTTGTAACGAGGTCCAAATTCCCGAGGCTCGTTGTTTTT 2233279 Query 1455995 ACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACA 1456054 | || | || ||||| | |||||||| || ||||||| ||||| || ||||| || | Sbjct 2233278 ATGGAATGCAAGTCGCCGTAGAAAACATTCATTCTGAAATGTACTCTCTTCTGATTGATA 2233219 Query 1456055 CCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGT 1456114 ||||||||||||| ||||| || ||| || ||| |||||| | ||| |||||| Sbjct 2233218 CCTACGTCAAGGATCCGGTAGAACGCGACTTTCTGTTTAACGCCATTCAAACGTTGCCGT 2233159 Query 1456115 CGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGAT--CAACAAGGAGGGCCTCGACAC 1456172 || || |||||||| ||||| | | |||||| ||| | | ||| || Sbjct 2233158 GTGTTGCTAAGAAGGCCGATTGGGCTCTTAGGTGGATTGCAAATAAAAAGGC----ACCG 2233103 Query 1456173 TTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGC--ATCTTTTTCTCGGGCAGTT 1456229 | || ||||| || || | || || || | |||||| || |||||| | || || Sbjct 2233102 TACGCGGAGCGTCTGGTGGCGTTCGCTGCTATTGAGGGCGTATTCTTTTCTGGTTCATTT 2233043 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAAC 1456289 || ||||||| |||||||||||||| || |||||||| || | || |||||| ||| Sbjct 2233042 GCT--TCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGG-CCTCACCTTTAGTAAC 2232986 Query 1456290 GAATTTATCAGTCGCGACGAAG 1456311 || | |||||||| || |||| Sbjct 2232985 GAGCTGATCAGTCGAGATGAAG 2232964 >seq385 Length=66281 Score = 107 bits (118), Expect = 3e-17 Identities = 165/233 (71%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||||||||| || || |||| || ||| | Sbjct 28639 ATCTACAAGGTGCTGCGCCAGGTGCACCCGGACAC-----GGGCATC-TCGTCGAAGGCG 28586 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||||| || || |||||||| |||| || || | | ||||| | || Sbjct 28585 ATGTCGATCATGAACTCCTTCGTGAACGACATCTTCGAGCGAATTGCCGCCGAGTCGAGT 28526 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087 || |||||| || ||||||| || ||| |||| || ||||| ||||| || Sbjct 28525 CGGTTGGCGCACTACAACAAG---AAGTCGACTATCACGAGCCGAGAGATTCAGACTGCA 28469 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| ||| | ||| || || |||| | |||||| || || |||||||| Sbjct 28468 GTGCGTCTGCTGCTGCCGGGTGAGTTGGCGAAGCACGCGGTGTCGGAGGGCAC 28416 Score = 107 bits (118), Expect = 3e-17 Identities = 165/233 (71%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||||||||| || || |||| || ||| | Sbjct 60314 ATCTACAAGGTGCTGCGCCAGGTGCACCCGGACAC-----GGGCATC-TCGTCGAAGGCG 60261 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||||| || || |||||||| |||| || || | | ||||| | || Sbjct 60260 ATGTCGATCATGAACTCCTTCGTGAACGACATCTTCGAGCGAATTGCCGCCGAGTCGAGT 60201 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087 || |||||| || ||||||| || ||| |||| || ||||| ||||| || Sbjct 60200 CGGTTGGCGCACTACAACAAG---AAGTCGACTATCACGAGCCGAGAGATTCAGACTGCA 60144 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| ||| | ||| || || |||| | |||||| || || |||||||| Sbjct 60143 GTGCGTCTGCTGCTGCCGGGTGAGTTGGCGAAGCACGCGGTGTCGGAGGGCAC 60091 >seq211 Length=118686 Score = 107 bits (118), Expect = 3e-17 Identities = 165/233 (71%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||||||||| || || |||| || ||| | Sbjct 108035 ATCTACAAGGTGCTGCGCCAGGTGCACCCGGACAC-----GGGCATC-TCGTCGAAGGCG 107982 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||||| || || |||||||| |||| || || | | ||||| | || Sbjct 107981 ATGTCGATCATGAACTCCTTCGTGAACGACATCTTCGAGCGAATTGCCGCCGAGTCGAGT 107922 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087 || |||||| || ||||||| || ||| |||| || ||||| ||||| || Sbjct 107921 CGGTTGGCGCACTACAACAAG---AAGTCGACTATCACGAGTCGAGAGATTCAGACTGCA 107865 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| ||| | ||| || || |||| | |||||| || || |||||||| Sbjct 107864 GTGCGTCTGCTGCTGCCGGGTGAGTTGGCGAAGCACGCAGTGTCGGAGGGCAC 107812 >seq184 Length=144950 Score = 107 bits (118), Expect = 3e-17 Identities = 165/233 (71%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||||||||| || || |||| || ||| | Sbjct 15376 ATCTACAAGGTGCTGCGCCAGGTGCACCCGGACAC-----GGGCATC-TCGTCGAAGGCG 15323 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||||| || || || ||||| |||| || || | | ||||| | || Sbjct 15322 ATGTCGATCATGAACTCCTTCGTGAATGACATCTTCGAGCGAATTGCCGCCGAGTCGAGT 15263 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087 || |||||| || ||||||| || ||| | |||| || ||||| ||||| || Sbjct 15262 CGGTTGGCGCACTACAACAAG---AAGTCGACCATCACGAGTCGAGAGATTCAGACTGCA 15206 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| ||| | ||| || || |||| | |||||| || || |||||||| Sbjct 15205 GTGCGTCTGTTGCTGCCGGGTGAGTTGGCGAAGCACGCAGTGTCGGAGGGCAC 15153 >seq377 Length=67819 Score = 102 bits (112), Expect = 1e-15 Identities = 165/235 (70%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| || || || |||| || ||| | Sbjct 65183 ATCTACAAGGTGCTGCGTCAGGTGCATCCTGACAC-----GGGCATC-TCGTCGAAGGCG 65236 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||| |||||||| || || |||||||| |||| ||||| | | ||||| | || Sbjct 65237 ATGTCGATAATGAACTCCTTCGTGAACGACATCTTCGAGCGCATTGCCGCCGAGTCGAGT 65296 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAGACCGCC 725087 || |||||| | ||||||| || ||| |||| || ||||||||||| || Sbjct 65297 CGGTTGGCGCATTACAACAAG---AAGTCGACAATCACGAGCAGAGAGATCCAGACTGCT 65353 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||| | ||| || || |||| | |||||| || | |||||||||| Sbjct 65354 GTGCGTCTGCTGCTGCCGGGTGAGTTGGCGAAGCACGCGGTGCCGGAGGGCACCA 65408 >seq316 Length=81186 Score = 102 bits (112), Expect = 1e-15 Identities = 165/235 (70%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| || || || ||| ||| ||| | Sbjct 35657 ATCTACAAGGTGCTACGTCAGGTGCATCCTGACAC-----GGGCAT-CTCGTCGAAGGCG 35604 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||| |||||||| || || |||||||| |||| ||||| | | ||||| | || Sbjct 35603 ATGTCGATAATGAACTCCTTCGTGAACGACATCTTCGAGCGCATTGCCGCCGAGTCGAGT 35544 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAGACCGCC 725087 || |||||| | ||||||| || ||| |||| || ||||| ||||| || Sbjct 35543 CGGTTGGCGCATTACAACAAG---AAGTCGACAATCACGAGCAGAGAGATTCAGACTGCT 35487 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||| | ||| || || |||| | |||||| || || |||||||||| Sbjct 35486 GTGCGTCTGCTGCTGCCGGGTGAGTTGGCGAAGCACGCGGTGTCGGAGGGCACCA 35432 Score = 102 bits (112), Expect = 1e-15 Identities = 165/235 (70%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| || || || ||| ||| ||| | Sbjct 38454 ATCTACAAGGTGCTGCGTCAGGTGCATCCTGACAC-----GGGCAT-CTCGTCGAAGGCG 38401 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||| |||||||| || || |||||||| |||| ||||| | | ||||| | || Sbjct 38400 ATGTCGATAATGAACTCCTTCGTGAACGACATCTTCGAGCGCATTGCCGCCGAGTCGAGT 38341 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAGACCGCC 725087 || |||||| | ||||||| || ||| |||| || ||||| ||||| || Sbjct 38340 CGGTTGGCGCATTACAACAAG---AAGTCGACAATCACGAGCAGAGAGATTCAGACTGCT 38284 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||| | ||| || || |||| | |||||| || || |||||||||| Sbjct 38283 GTGCGTCTGCTGCTGCCGGGTGAGTTGGCGAAGCACGCGGTGTCGGAGGGCACCA 38229 >seq183 Length=145542 Score = 102 bits (112), Expect = 1e-15 Identities = 165/235 (70%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| || || || ||| ||| ||| | Sbjct 9069 ATCTACAAGGTGCTGCGTCAGGTGCATCCTGACAC-----GGGCAT-CTCGTCGAAGGCG 9122 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||| |||||||| || || |||||||| |||| ||||| | | ||||| | || Sbjct 9123 ATGTCGATAATGAACTCCTTCGTGAACGACATCTTCGAGCGCATTGCCGCCGAGTCGAGT 9182 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAGACCGCC 725087 || |||||| | ||||||| || ||| |||| || ||||| ||||| || Sbjct 9183 CGGTTGGCGCATTACAACAAG---AAGTCGACAATCACGAGCAGAGAGATTCAGACTGCT 9239 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||| | ||| || || |||| | |||||| || || |||||||||| Sbjct 9240 GTGCGTCTGCTGCTGCCGGGTGAGTTGGCGAAGCACGCGGTGTCGGAGGGCACCA 9294 Score = 102 bits (112), Expect = 1e-15 Identities = 165/235 (70%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| || || || ||| ||| ||| | Sbjct 65798 ATCTACAAGGTGCTGCGTCAGGTGCATCCTGACAC-----GGGCAT-CTCGTCGAAGGCG 65745 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||| |||||||| || || |||||||| |||| ||||| | | ||||| | || Sbjct 65744 ATGTCGATAATGAACTCCTTCGTGAACGACATCTTCGAGCGCATTGCCGCCGAGTCGAGT 65685 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAGACCGCC 725087 || |||||| | ||||||| || ||| |||| || ||||| ||||| || Sbjct 65684 CGGTTGGCGCATTACAACAAG---AAGTCGACAATCACGAGCAGAGAGATTCAGACTGCT 65628 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||| | ||| || || |||| | |||||| || || |||||||||| Sbjct 65627 GTGCGTCTGCTGCTGCCGGGTGAGTTGGCGAAGCACGCGGTGTCGGAGGGCACCA 65573 >seq276 Length=91072 Score = 93.3 bits (102), Expect = 6e-13 Identities = 163/235 (69%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| || || || ||| ||| ||| | Sbjct 88427 ATCTACAAGGTGCTGCGTCAGGTGCATCCTGACAC-----GGGCAT-CTCGTCGAAGGCG 88480 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||| |||||||| || || |||||||| |||| ||||| | | ||||| | || Sbjct 88481 ATGTCGATAATGAACTCCTTCGTGAACGACATCTTCGAGCGCATTGCCGCCGAGTCGAGT 88540 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAGACCGCC 725087 || |||||| | ||||||| || ||| |||| || ||||| ||||| || Sbjct 88541 CGGTTGGCGCATTACAACAAG---AAGTCGACAATCACGAGCAAGGAGATTCAGACTGCT 88597 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| ||| | || || || | |||| |||||| || || |||||||||| Sbjct 88598 ATGCGTCTGCTGCTGTCGGGTGAGTTAGCCAAGCACGCGGTATCGGAGGGCACCA 88652 >seq133 Length=234970 Score = 89.7 bits (98), Expect = 7e-12 Identities = 129/181 (71%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||||||||||||||| || || || ||||| |||| || || | | |||| Sbjct 54643 AAGGCGATGTCGATCATGAACTCCTTCGTGAATGACATCTTCGAGCGGATTGCCGCCGAA 54584 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAG 725081 | | || |||||| | ||||||| || ||| |||| | ||||||||| Sbjct 54583 TCGAGCCGTTTGGCGCATTACAACAAG---AAATCGACAATCACGAGTAGAGAGATCCAG 54527 Query 725082 ACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACC 725141 || || ||||| ||| | ||| ||| || |||| | |||||| || || ||||||||| Sbjct 54526 ACTGCTGTGCGTCTGCTGCTGCCCGGTGAGTTGGCTAAGCACGCGGTGTCGGAGGGCACC 54467 Query 725142 A 725142 | Sbjct 54466 A 54466 >seq189 Length=137677 Score = 87.8 bits (96), Expect = 3e-11 Identities = 163/235 (69%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | |||||||| ||| || || ||| ||| ||| | Sbjct 42414 ATCTACAAGGTGTTGCGTCAGGTGCA--TCCGGAC---ACGGGCAT-CTCGTCGAAGGCG 42361 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| || |||||||| || || |||||||| |||| || |||| | ||||| | | Sbjct 42360 ATGTCAATAATGAACTCCTTCGTGAACGACATCTTCGAGCGGATCGCCGCCGAGTCGAGC 42301 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAGACCGCC 725087 || |||||| | ||||||| || ||| |||| || ||||| ||||| || Sbjct 42300 CGGTTGGCGCATTACAACAAG---AAGTCGACAATCACGAGCAGAGAGATTCAGACTGCT 42244 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||| | ||| || || |||| | |||||| || || |||||||||| Sbjct 42243 GTGCGTCTGCTGCTGCCGGGTGAGTTGGCGAAGCACGCGGTGTCGGAGGGCACCA 42189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177145682317800