Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq52 152 5e-32 seq76 91.5 1e-13 seq4 89.7 5e-13 >seq52 Length=575441 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | || |||||| || | ||| |||||| ||||||||||| |||| | Sbjct 527269 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 527210 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| |||||| || ||||| ||||| || |||||||||| || Sbjct 527209 AACGTGCGACCATCCTCCAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 527150 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||| ||| |||||| ||||| | | | || ||| |||| |||||| Sbjct 527149 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 527090 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||| || || || || |||| || ||||||||||| ||||| Sbjct 527089 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCAT 527043 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | ||| ||| || ||||||||||| |||| | Sbjct 519199 CCACCACGGAGTCGAAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAC 519258 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || | |||||| || ||||| ||||| || |||||||||| || Sbjct 519259 AACGTGCGACCATCTTCTAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 519318 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | | || ||| |||| |||||| Sbjct 519319 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACC 519378 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||| || || || || |||| || ||||||||||| ||||| Sbjct 519379 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCAT 519425 Score = 140 bits (154), Expect = 3e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||||||||| || || | || ||| || | || |||| |||||| |||||||| Sbjct 526322 CTCCTTTTGAATGTTATAGTCAGACAGGGTGCGACCATCTTCCAACTGCTTCCCCGCAAA 526263 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||||||| |||| || ||||||||| ||||| ||||| | | Sbjct 526262 GATTAGACGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATT 526203 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||||||||| ||| || || || || |||| ||||||||| Sbjct 526202 CTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTAATTGTCTTGCCGGTCAGAGTTTTCAC 526143 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 526142 AAAAATTTGCAT 526131 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | ||| ||| || ||||||||||| |||| | Sbjct 527953 CCACCACGGAGTCGAAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAC 527894 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || | |||||| || ||||| ||||| || |||||||||| || Sbjct 527893 AACGTGCGACCATCTTCTAACTGCTTTCCTGCAAAGATCAATCGTTGCTGGTCCGGTGGG 527834 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||| ||| |||||| ||||| | | | || ||| |||| |||||| Sbjct 527833 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTCGGCTCCACC 527774 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||| || || || || |||| || ||||||||||| ||||| Sbjct 527773 TCCAACGTAATTGTCTTCCCAGTCAGCGTCTTCACAAATATTTGCAT 527727 Score = 132 bits (146), Expect = 4e-26 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| |||| ||| || || | || |||| |||||| || || || Sbjct 518890 TCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCCAACTGCTTGCCAGCGAAG 518949 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG-ATCTTTTGCTTCAGAGT 35664 ||||| || |||||||| | ||||| || |||||| | |||| ||||| ||||| | | Sbjct 518950 ATCAATCGTTGCTGGTCAGGAGGAATGCCCTCCTTAT-CATGAATCTTAGCCTTCACATT 519008 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| |||| |||||||||| ||| || || || || || | || ||||| Sbjct 519009 CTCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCAC 519068 Query 35725 AAATATCTGCAT 35736 |||||||||||| Sbjct 519069 AAATATCTGCAT 519080 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | || |||||| || | ||| ||| || ||||||||||| || | Sbjct 527041 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCAGAT 526982 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||| || || || ||||| || |||||||| | ||| Sbjct 526981 AGAGTACGACCATCCTCCAACTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 526922 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | | ||| || | |||||| Sbjct 526921 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCTATAGAGTCACTGGGCTCCACC 526862 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | ||||| |||||||||||||| Sbjct 526861 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTAACAAATATCTGCAT 526815 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| |||| ||| || || | || |||| |||||| || || || Sbjct 528145 TCCTTCTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCCAACTGCTTGCCAGCGAAG 528086 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||||| | || | || |||||| || |||||| ||||| | Sbjct 528085 ATCATTCGTTGCTGGTCTGGTGGTATGCCCTCCTTTTCTTGTATCTTTGCCTTCACTTTC 528026 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || ||| |||| |||||||||| ||| || || || || || | || |||||| Sbjct 528025 TCTATCGAGTCACTCGGCTCCACCTCCAACGTAATTGTCTTCCCAGTTAGCGTCTTCACA 527966 Query 35726 AATATCTGCAT 35736 ||||||||||| Sbjct 527965 AATATCTGCAT 527955 Score = 109 bits (120), Expect = 5e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| || | | ||| || | || |||| |||||| || || || Sbjct 527461 TCCTTCTGAATGTTGTAGTCTGATAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAG 527402 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGT 35664 ||||| |||||||| || | |||| | |||||| ||| ||| ||| | ||||| | | Sbjct 527401 ATCAAACGCTGCTGATCAGGCGGAATACCCTCCTTATCC-TGAATTTTGGCCTTCACATT 527343 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||| |||| ||| || || || || |||| || ||||| Sbjct 527342 CTCAATTGTGTCGCTAGGTTCCACTTCCAGCGTAATAGTCTTCCCAGTCAGCGTCTTCAC 527283 Query 35725 AAATATCTGCAT 35736 ||||| ||||| Sbjct 527282 GAATATTTGCAT 527271 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| | ||| | ||| |||||||||||||||||| |||| Sbjct 526585 CCACCACGAAGTCGTAGCACAAGATGAAGCGTTGACTCCTTTTGAATGTTGTAGTCGGAA 526526 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||||| ||||| ||||| ||||||||||| | ||| Sbjct 526525 AGAGTGCGGCCATCCTCCAATTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGTGGA 526466 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| || |||||| ||| | | | | || ||||| | ||| || Sbjct 526465 ATGCCTTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCGCTGGGTTCAACT 526406 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||| || || || || || | ||| || ||||| |||||||| Sbjct 526405 TCTAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAAATCTGCAT 526359 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| | ||| | ||| ||||||||||||||||||||| | Sbjct 526813 CCACCACGGAGTCGAAGCACGAGATGAAGCGTTGACTCCTTTTGAATGTTGTAATCAGAA 526754 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||| ||||||||| || || ||||| ||||| || || | ||| Sbjct 526753 AGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGGA 526694 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||| || |||||| ||| | | | | || || || | ||| || Sbjct 526693 ATGCCCTCCTTATCTTGGATCTTCGCCTTTACGTTCTCAATCGAATCACTGGGTTCAACT 526634 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||| || || || || || | ||| || ||||| |||||||| Sbjct 526633 TCTAGCGTTATGGTCTTGCCTGTTAGAGTCTTGACAAAGATCTGCAT 526587 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| |||| | || || |||| |||| ||| || || ||||| Sbjct 519462 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCCAACTGTTTGCCAGCAAA 519521 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| |||||||| |||| || | | ||| ||||| ||||| ||||| | | Sbjct 519522 GATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATT 519581 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | || ||||| | ||||| || || || || | || ||||| Sbjct 519582 CTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCAC 519641 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 519642 AAAGATTTGCAT 519653 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| |||| | || || | || |||| ||| || || ||||| Sbjct 527690 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCCTCCAACTGTTTGCCAGCAAA 527631 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| |||||||| |||| || | | ||| ||||| ||||| ||||| | | Sbjct 527630 GATCAAACGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGAATCTTGGCCTTCACATT 527571 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | || ||||| | ||||| || || || || | || || || Sbjct 527570 CTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTTAC 527511 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 527510 GAAGATCTGCAT 527499 >seq76 Length=461818 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 44306 AGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCTACCCATCT 44364 |||| ||||||||| |||||||| |||||||| |||||| |||||||| | |||| | | Sbjct 230193 AGGAGTTATGTGGTCAATTTGCGGAGTCCACGATCAGGGC-TGGCGAGAACGACCCGTTT 230251 Query 44365 ACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGT 44416 ||||||| | ||||||||||||| | || || ||||| |||||||| Sbjct 230252 TCGGCAAAATTCGCTACATGAACTTCGCTGGCTGTAAGAGAAAATTTGATGT 230303 >seq4 Length=3027866 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||| |||||||| | |||| || | || |||| ||||| || ||||| Sbjct 343674 CTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAA 343733 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||| ||||| | |||| | ||||||||| ||||| ||||| | | Sbjct 343734 AATAAGACGCTGTTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTAGCCTTCACATT 343793 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||| | || ||||| | ||||| ||||| || || | ||||||||| Sbjct 343794 CTCAATAGAATCGGAGGGCTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCAC 343853 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 343854 AAAAATCTGCAT 343865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450754719052000