Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5 158 1e-33 >seq5 Length=2931570 Score = 158 bits (174), Expect = 1e-33 Identities = 398/593 (67%), Gaps = 13/593 (2%) Strand=Plus/Minus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || || || ||| | || || ||||| ||||| || ||| | | ||||| ||||| Sbjct 2233528 AGATTCGTTGTGATGCCCATCCAATACCATGATATTTGGGAGTTCTACAAGAAAGCGGTT 2233469 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG-ATTGC 43815 || || || ||||||| || ||||||||||| | || || | | | ||| | | Sbjct 2233468 GCCTCTTTCTGGACAGTTGAGGAAGTTGATTTAGCGAAGGATCTCACTGACTGGGAAAGT 2233409 Query 43816 ATTAAA-ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 |||| | | || || || || || | || ||||| || || || || || | Sbjct 2233408 CTTAATGATGGCGAGCGTCAC--TTCATTTCGTATGTCTTGGCTTTCTTCGCGGCCAGTG 2233351 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA-GAAGTTCAATTACCAGAA 43933 | || || || ||||||||| | | | ||| | || || || ||| | || || Sbjct 2233350 ATGGCATCGTTAATGAAAATCTAACTT-TGAATTTTTGTAACGAGGTCCAAATTCCCGAG 2233292 Query 43934 GCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993 || || ||||||||||| | ||| | ||| ||||||| |||||||| ||||||||| | Sbjct 2233291 GCTCGTTGTTTTTATGGAATGCAAGTCGCCGTAGAAAACATTCATTCTGAAATGTACTCT 2233232 Query 43994 CTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGAT-TGTTTAATGCGAT 44052 |||||||| ||||| ||| |||| ||| | || | || | | ||||||| || || Sbjct 2233231 CTTCTGATTGATACCTACGTCAAGGATCCGGTAGA-ACGCGACTTTCTGTTTAACGCCAT 2233173 Query 44053 AGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATT 44108 |||| | || || | || | || || || ||||| |||| ||||| |||| Sbjct 2233172 TCAAACGTTGCCGTGTG-TTGCTAAGAAGGCCGATTGGGCTCTTAGGTGGATTGCAAATA 2233114 Query 44109 CAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168 ||| | | | | || || || || ||||| || | | | || ||| | ||||||| Sbjct 2233113 AAAAGGCACCGTACGCGGAGCGTCTGGTGGCGTTCGCTGCTATTGAGGGCGTATTCTTTT 2233054 Query 44169 CAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGT 44228 | || || ||||| |||| || ||| | ||||| || ||| | |||||||| | || | Sbjct 2233053 CTGGTTCATTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACCT 2232994 Query 44229 TTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || || ||| | || ||||| ||||||||| | || |||||||| ||| Sbjct 2232993 TTAGTAACGAGCTGATCAGTCGAGATGAAGGCCTCCACACGGATTTTGCATGC 2232941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397422576434500