Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq1077 84.2 3e-11 seq131 84.2 3e-11 >seq1 Length=4220646 Score = 118 bits (130), Expect = 1e-21 Identities = 412/637 (65%), Gaps = 7/637 (1%) Strand=Plus/Minus Query 111452 CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGA 111511 || |||| ||||||||| | ||| || ||| |||||||| ||| ||| | ||| Sbjct 1714009 CCTTCCGACTCGTACTTCGCGTAAAGCATTTCGAACTCCTCCCCCCAACAGTCAGCAAGA 1713950 Query 111512 CCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATG 111571 || || || | || | || | ||| || |||| ||||||| ||||||||| Sbjct 1713949 CCGGGGCACTCATGGGGGTCCATAAAGGTCCACGAACTACCTGCCTCAACTCGCTTCATG 1713890 Query 111572 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 111631 || || || |||||||| || | |||||||| | | ||| |||||| | || Sbjct 1713889 AATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATCTCTTCAGCGCCA 1713830 Query 111632 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 111691 ||| |||||||| | |||| || | ||||| |||||||| || ||||||| Sbjct 1713829 GTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGTTCGAGATAGATG 1713770 Query 111692 GCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAAT 111748 || | | || ||| | || | |||| ||||| || || ||| ||| || Sbjct 1713769 GCAAAGGCACCGGGTCGTTTATTGCCTCCCTGATCGACATAACGAGCGGTGCTGTTGAAG 1713710 Query 111749 ACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTA 111808 || |||||||| || | || ||||| || | ||||| || || ||| | || Sbjct 1713709 ACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCCAGCGATAAACGTATTC 1713650 Query 111809 TTGGCTCTCACAT-CA-TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCG 111866 || ||| || || || || | | | || || || || || || ||||| | | Sbjct 1713649 TT-GCT-TCGGATGCAGTGAACATTGAGACCGATCCCACCCGCGTTTTTCGAGATCAGTG 1713592 Query 111867 CACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGA 111926 |||| | | || || |||| ||||| | ||| ||| ||||| | | | | | Sbjct 1713591 CACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCCTTCATTGTAAGCAAAA 1713532 Query 111927 AGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAA 111986 | || || |||||||| || || || |||||||| || || || |||| ||||||| Sbjct 1713531 AACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTGGGTGAGGCGTGAA 1713472 Query 111987 TGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGT 112046 | ||| || ||||| | ||| ||||| | ||| || | ||||| || | Sbjct 1713471 TCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCGTCCACATCTTCACCAT 1713412 Query 112047 GGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | || || |||| ||| ||||| ||||||||||| || Sbjct 1713411 GAATACCTATTGAGACGCGCATAAACATGTACTGAGG 1713375 >seq1077 Length=20753 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/188 (72%), Gaps = 7/188 (4%) Strand=Plus/Minus Query 181799 AGAAGCG---TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGC-TCAAGAA 181854 ||||||| || || ||||| |||||||||||| || |||||| | ||| |||| | Sbjct 5906 AGAAGCGGAATCCTTGCCACCGGCGAGACGCGTACCGAACTGACCATAGGGCATCAA-CA 5848 Query 181855 GGTTAATGTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGG 181914 | || | |||||| |||||| | |||| | |||| || |||||| || |||| Sbjct 5847 GATTGAGGTTGTTGGAACCTACAAAGTCCTGAGCCAGTCCAATGATGGTGCCCATGAGGG 5788 Query 181915 ACACTTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGC-CAACTGTGCCACC 181973 |||| || || |||||||| | ||| | || || || |||| |||||| |||||| Sbjct 5787 ACACCTCGCCATGGTGGTAGGAGGACATCTCTGCCAC-GGCACCGCACAACTGAGCCACC 5729 Query 181974 TTCATTTC 181981 || ||||| Sbjct 5728 TTAATTTC 5721 >seq131 Length=238489 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/188 (72%), Gaps = 7/188 (4%) Strand=Plus/Minus Query 181799 AGAAGCG---TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGC-TCAAGAA 181854 ||||||| || || ||||| |||||||||||| || |||||| | ||| |||| | Sbjct 5906 AGAAGCGGAATCCTTGCCACCGGCGAGACGCGTACCGAACTGACCATAGGGCATCAA-CA 5848 Query 181855 GGTTAATGTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGG 181914 | || | |||||| |||||| | |||| | |||| || |||||| || |||| Sbjct 5847 GATTGAGGTTGTTGGAACCTACAAAGTCCTGAGCCAGTCCAATGATGGTGCCCATGAGGG 5788 Query 181915 ACACTTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGC-CAACTGTGCCACC 181973 |||| || || |||||||| | ||| | || || || |||| |||||| |||||| Sbjct 5787 ACACCTCGCCATGGTGGTAGGAGGACATCTCTGCCAC-GGCACCGCACAACTGAGCCACC 5729 Query 181974 TTCATTTC 181981 || ||||| Sbjct 5728 TTAATTTC 5721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627977832240000