Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 109 6e-19 seq1077 93.3 5e-14 seq131 93.3 5e-14 >seq5 Length=2931570 Score = 109 bits (120), Expect = 6e-19 Identities = 174/246 (71%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 || ||| | ||||| ||||| | |||||| || ||||| || ||||||||| | | | Sbjct 2233186 CTGTTTAACGCCATTCAAACGTTGCCGTGTGTTGCTAAGAAGGCCGATTGGGCTCTTAGG 2233127 Query 94774 TGGTTTG---ATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 94830 ||| ||| ||| |||| | | | | || ||||| || | || || || | || Sbjct 2233126 TGGATTGCAAATAAAAAGGCACCGTAC---GCGGAGCGTCTGGTGGCGTTCGCTGCTATT 2233070 Query 94831 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCT 94889 ||||| | ||||| |||||||| || ||| | || | |||||||||||||| ||||| Sbjct 2233069 GAGGGCGTATTCTTTTCTGGTTCATT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCT 2233011 Query 94890 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGA 94949 |||||| || ||| ||| |||||||| ||| ||| || || || |||||| || Sbjct 2233010 CATGCCTGGCCTCACCTTTAGTAACGAGCTGATCAGTCGAGATGAAGGCCTCCACACGGA 2232951 Query 94950 GTTTGC 94955 ||||| Sbjct 2232950 TTTTGC 2232945 >seq1077 Length=20753 Score = 93.3 bits (102), Expect = 5e-14 Identities = 177/256 (69%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 169265 TGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGT-GTGAC 169323 || ||||||| ||||| |||||| ||| | ||| || ||| ||| ||| | Sbjct 2100 TGCAGACCCAGAATCTTAATGAGATTGTTAATCTCAGCATTCTCCATGATCTGCCGTGTC 2041 Query 169324 AGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACG 169383 ||| | || |||||||| || || |||||||||||||| || ||| | ||||| Sbjct 2040 GGAG-CTTCACGAACATTGAGCAGTTTACCGCGAAGAGGGAAGACGCCATAGCGGTCACG 1982 Query 169384 ACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGAT 169443 ||||| || |||||| || || || |||| ||| |||||||| ||||| |||| ||| Sbjct 1981 TCCAACCACTCCGAGACCGGCCACGGCAAGAGACTTGGCCGAGTCTCCCTCAGTGAGGAT 1922 Query 169444 GAGCGTACATT--TTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGA 169501 ||| || || | | | || | | || || || | ||| ||||| |||| || ||| Sbjct 1921 GAGGGTGCAGTGCTGCGAGTTCCT--TGTTCCTGCATCGTTGGCATCGTCCAGCTTTGGA 1864 Query 169502 ATACCAGTAATTTTGG 169517 || || | | ||||| Sbjct 1863 ATCCCCTTTAATTTGG 1848 >seq131 Length=238489 Score = 93.3 bits (102), Expect = 5e-14 Identities = 177/256 (69%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 169265 TGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGT-GTGAC 169323 || ||||||| ||||| |||||| ||| | ||| || ||| ||| ||| | Sbjct 2100 TGCAGACCCAGAATCTTAATGAGATTGTTAATCTCAGCATTCTCCATGATCTGCCGTGTC 2041 Query 169324 AGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACG 169383 ||| | || |||||||| || || |||||||||||||| || ||| | ||||| Sbjct 2040 GGAG-CTTCACGAACATTGAGCAGTTTACCGCGAAGAGGGAAGACGCCATAGCGGTCACG 1982 Query 169384 ACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGAT 169443 ||||| || |||||| || || || |||| ||| |||||||| ||||| |||| ||| Sbjct 1981 TCCAACCACTCCGAGACCGGCCACGGCAAGAGACTTGGCCGAGTCTCCCTCAGTGAGGAT 1922 Query 169444 GAGCGTACATT--TTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGA 169501 ||| || || | | | || | | || || || | ||| ||||| |||| || ||| Sbjct 1921 GAGGGTGCAGTGCTGCGAGTTCCT--TGTTCCTGCATCGTTGGCATCGTCCAGCTTTGGA 1864 Query 169502 ATACCAGTAATTTTGG 169517 || || | | ||||| Sbjct 1863 ATCCCCTTTAATTTGG 1848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583210493756000