Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20asiatica_20[genbank_20GCA_5F001693035.2_202016-09-02] 6,900 sequences; 168,679,183 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq1 109 6e-19 >seq5 Length=2931570 Score = 114 bits (126), Expect = 1e-20 Identities = 368/564 (65%), Gaps = 9/564 (2%) Strand=Plus/Minus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 |||| ||| | |||| | || ||||||||| | | || |||||| | || ||||| Sbjct 2233504 TACCATGATATTTGGGAGTTCTACAAGAAAGCGGTTGCCTCTTTCTGGACAGTTGAGGAA 2233445 Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTC 59693 |||| | || || || | || ||||| | || ||| | | ||||| || ||| Sbjct 2233444 GTTGATTTAGCGAAGGATCTCACTGACTGGGAAAGTCTTAATGATGGCGAGCGTCACTTC 2233385 Query 59694 ATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGAC 59753 || | ||| |||| ||||||||||| |||||||| || || | |||||| || Sbjct 2233384 ATTTCGTATGTCTTGGCTTTCTTCGCGGCCAGTGATGGCATCGTTAATGAAAATCTAACT 2233325 Query 59754 ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTAT--CAGT 59811 |||| |||| || || ||||| ||| ||||||| || | || || | | || ||| Sbjct 2233324 TTGAATTTTTGTAACGAGGTCCAAATTCCCGAGGCTCGTTGTTTTTATG-GAATGCAAGT 2233266 Query 59812 CGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGG 59871 || | || || || || || | |||||| || |||| |||| | ||||||| Sbjct 2233265 CG-CCGTAGAAAACATTCATTCTGAAATGTACTCTCTTCTGATTGATACCTACGTCAAGG 2233207 Query 59872 ATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAA 59931 |||||| ||| | |||||| ||||| | |||| || ||| | | Sbjct 2233206 ATCCGGTAGAACGCGACTTTCTGTTTAACGCCATTCAAACGTTGCCGTGTGTTGCTAAGA 2233147 Query 59932 AAGCAGAATGGGCCATGCAGTGGAT---GAGTCCTGGAGCATCATTTGCACAACGTCTCA 59988 | || || ||||| | |||||| | | ||| | | || | ||||| Sbjct 2233146 AGGCCGATTGGGCTCTTAGGTGGATTGCAAATAAAAAGGCACCGTACGCGGAGCGTCTGG 2233087 Query 59989 TAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 | || || || ||| | || || | ||||| ||||| || || | | || |||||| Sbjct 2233086 TGGCGTTCGC-TGCTATTGAGGGCGTATTCTTTTCTGGTTCATTTGCTTCCATCTTCTGG 2233028 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGAC 60107 ||||| |||||||| |||||||| ||||| | || ||||||||||| || || Sbjct 2233027 CTCAAGAAGCGTGGTCTCATGCCTGGCCTCACCTTTAGTAACGAGCTGATCAGTCGAGAT 2232968 Query 60108 GAGGGCCTCCATCAGGAGTTTGCA 60131 || |||||||| ||| |||||| Sbjct 2232967 GAAGGCCTCCACACGGATTTTGCA 2232944 >seq1 Length=4220646 Score = 109 bits (120), Expect = 6e-19 Identities = 353/540 (65%), Gaps = 6/540 (1%) Strand=Plus/Minus Query 79371 CTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACG 79430 |||||| || |||||| || || || ||||| || || |||||| || || || Sbjct 1713905 CTCAACTCGCTTCATGAATAGATCGGGAATCCAAAGTGCGAGGAAGAGATCCCGAGCGCG 1713846 Query 79431 CATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCA 79490 ||||| || |||| |||| || | ||| | ||| | || | || | ||||| Sbjct 1713845 AATCTCTTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCA 1713786 Query 79491 CGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCG 79550 || || ||||||||||| || | ||| || || ||| ||||| | ||| || || Sbjct 1713785 TGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTATTGCCTCCCTGATCGACATAACG 1713726 Query 79551 GGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCC 79610 || ||| ||||||| || || ||||| || || | || | || | || || || || Sbjct 1713725 AGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCATTGGACTCCCCATTAGTTCC 1713666 Query 79611 GTTGATTCGTGTACCGCTCGCC-CGAATGTTC-GAGCAGTGGATTCCGATGCCCCCGGAC 79668 ||| ||| || || || ||| || || || | ||||| || || | Sbjct 1713665 AGCGATAAACGTATT-CTTGCTTCGGATGCAGTGAACATTG-AGACCGATCCCACCCGCG 1713608 Query 79669 CACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCC 79728 || ||||| | || || | |||||||| || || || |||||||| ||||||| Sbjct 1713607 TTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCC 1713548 Query 79729 TTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGG 79788 ||||| | | || || ||||| |||||||| |||| ||| || || || || || Sbjct 1713547 TTCATTGTAAGCAAAAAACAGCTAGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGA 1713488 Query 79789 GTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC-CTTGACGCG 79847 || || | ||||| | || |||||| ||| |||| ||| ||||| | | ||| Sbjct 1713487 GTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTGTAGGTCTCAATAGCAGCG 1713428 Query 79848 CGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTC 79907 | || || || || || || | | ||||||||| || | |||||| ||| |||| Sbjct 1713427 -TCCACATCTTCACCATGAATACCTATTGAGACGCGCATAAACATGTACTGAGGCCTCTC 1713369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548477489736000